EVOLUTION-MANAGER
Edit File: markerlrt.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: General likelihood ratio test for association between marker...</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for markerlrt {qtl}"><tr><td>markerlrt {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>General likelihood ratio test for association between marker pairs</h2> <h3>Description</h3> <p>Calculate a LOD score for a general likelihood ratio test for each pair of markers, to assess their association. </p> <h3>Usage</h3> <pre> markerlrt(cross) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>cross</code></td> <td> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details.</p> </td></tr> </table> <h3>Value</h3> <p>The input <code>cross</code> object is returned with a component, <code>rf</code>, added. This is a matrix of size (tot.mar x tot.mar). The diagonal contains the number of typed meioses per marker, the upper and lower triangles each contain the LOD scores. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="plot.rf.html">plotRF</a></code>, <code><a href="est.rf.html">est.rf</a></code>, <code><a href="badorder.html">badorder</a></code> </p> <h3>Examples</h3> <pre> data(badorder) badorder <- markerlrt(badorder) plotRF(badorder) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>