EVOLUTION-MANAGER

Edit File: test_special_matrices.py

from __future__ import division, print_function, absolute_import

import numpy as np
from numpy import arange, add, array, eye, copy, sqrt
from numpy.testing import (assert_equal, assert_array_equal,
                           assert_array_almost_equal, assert_allclose)
from pytest import raises as assert_raises

from scipy._lib.six import xrange

from scipy.fft import fft
from scipy.special import comb
from scipy.linalg import (toeplitz, hankel, circulant, hadamard, leslie, dft,
                          companion, tri, triu, tril, kron, block_diag,
                          helmert, hilbert, invhilbert, pascal, invpascal,
                          fiedler, fiedler_companion, eigvals)
from numpy.linalg import cond

def get_mat(n):
    data = arange(n)
    data = add.outer(data, data)
    return data

class TestTri(object):
    def test_basic(self):
        assert_equal(tri(4), array([[1, 0, 0, 0],
                                    [1, 1, 0, 0],
                                    [1, 1, 1, 0],
                                    [1, 1, 1, 1]]))
        assert_equal(tri(4, dtype='f'), array([[1, 0, 0, 0],
                                               [1, 1, 0, 0],
                                               [1, 1, 1, 0],
                                               [1, 1, 1, 1]], 'f'))

def test_diag(self):
        assert_equal(tri(4, k=1), array([[1, 1, 0, 0],
                                         [1, 1, 1, 0],
                                         [1, 1, 1, 1],
                                         [1, 1, 1, 1]]))
        assert_equal(tri(4, k=-1), array([[0, 0, 0, 0],
                                         [1, 0, 0, 0],
                                         [1, 1, 0, 0],
                                         [1, 1, 1, 0]]))

def test_2d(self):
        assert_equal(tri(4, 3), array([[1, 0, 0],
                                       [1, 1, 0],
                                       [1, 1, 1],
                                       [1, 1, 1]]))
        assert_equal(tri(3, 4), array([[1, 0, 0, 0],
                                       [1, 1, 0, 0],
                                       [1, 1, 1, 0]]))

def test_diag2d(self):
        assert_equal(tri(3, 4, k=2), array([[1, 1, 1, 0],
                                            [1, 1, 1, 1],
                                            [1, 1, 1, 1]]))
        assert_equal(tri(4, 3, k=-2), array([[0, 0, 0],
                                             [0, 0, 0],
                                             [1, 0, 0],
                                             [1, 1, 0]]))

class TestTril(object):
    def test_basic(self):
        a = (100*get_mat(5)).astype('l')
        b = a.copy()
        for k in range(5):
            for l in range(k+1, 5):
                b[k, l] = 0
        assert_equal(tril(a), b)

def test_diag(self):
        a = (100*get_mat(5)).astype('f')
        b = a.copy()
        for k in range(5):
            for l in range(k+3, 5):
                b[k, l] = 0
        assert_equal(tril(a, k=2), b)
        b = a.copy()
        for k in range(5):
            for l in range(max((k-1, 0)), 5):
                b[k, l] = 0
        assert_equal(tril(a, k=-2), b)

class TestTriu(object):
    def test_basic(self):
        a = (100*get_mat(5)).astype('l')
        b = a.copy()
        for k in range(5):
            for l in range(k+1, 5):
                b[l, k] = 0
        assert_equal(triu(a), b)

def test_diag(self):
        a = (100*get_mat(5)).astype('f')
        b = a.copy()
        for k in range(5):
            for l in range(max((k-1, 0)), 5):
                b[l, k] = 0
        assert_equal(triu(a, k=2), b)
        b = a.copy()
        for k in range(5):
            for l in range(k+3, 5):
                b[l, k] = 0
        assert_equal(triu(a, k=-2), b)

class TestToeplitz(object):

def test_basic(self):
        y = toeplitz([1, 2, 3])
        assert_array_equal(y, [[1, 2, 3], [2, 1, 2], [3, 2, 1]])
        y = toeplitz([1, 2, 3], [1, 4, 5])
        assert_array_equal(y, [[1, 4, 5], [2, 1, 4], [3, 2, 1]])

def test_complex_01(self):
        data = (1.0 + arange(3.0)) * (1.0 + 1.0j)
        x = copy(data)
        t = toeplitz(x)
        # Calling toeplitz should not change x.
        assert_array_equal(x, data)
        # According to the docstring, x should be the first column of t.
        col0 = t[:, 0]
        assert_array_equal(col0, data)
        assert_array_equal(t[0, 1:], data[1:].conj())

def test_scalar_00(self):
        """Scalar arguments still produce a 2D array."""
        t = toeplitz(10)
        assert_array_equal(t, [[10]])
        t = toeplitz(10, 20)
        assert_array_equal(t, [[10]])

def test_scalar_01(self):
        c = array([1, 2, 3])
        t = toeplitz(c, 1)
        assert_array_equal(t, [[1], [2], [3]])

def test_scalar_02(self):
        c = array([1, 2, 3])
        t = toeplitz(c, array(1))
        assert_array_equal(t, [[1], [2], [3]])

def test_scalar_03(self):
        c = array([1, 2, 3])
        t = toeplitz(c, array([1]))
        assert_array_equal(t, [[1], [2], [3]])

def test_scalar_04(self):
        r = array([10, 2, 3])
        t = toeplitz(1, r)
        assert_array_equal(t, [[1, 2, 3]])

class TestHankel(object):
    def test_basic(self):
        y = hankel([1, 2, 3])
        assert_array_equal(y, [[1, 2, 3], [2, 3, 0], [3, 0, 0]])
        y = hankel([1, 2, 3], [3, 4, 5])
        assert_array_equal(y, [[1, 2, 3], [2, 3, 4], [3, 4, 5]])

class TestCirculant(object):
    def test_basic(self):
        y = circulant([1, 2, 3])
        assert_array_equal(y, [[1, 3, 2], [2, 1, 3], [3, 2, 1]])

class TestHadamard(object):

def test_basic(self):

y = hadamard(1)
        assert_array_equal(y, [[1]])

y = hadamard(2, dtype=float)
        assert_array_equal(y, [[1.0, 1.0], [1.0, -1.0]])

y = hadamard(4)
        assert_array_equal(y, [[1, 1, 1, 1],
                               [1, -1, 1, -1],
                               [1, 1, -1, -1],
                               [1, -1, -1, 1]])

assert_raises(ValueError, hadamard, 0)
        assert_raises(ValueError, hadamard, 5)

class TestLeslie(object):

def test_bad_shapes(self):
        assert_raises(ValueError, leslie, [[1, 1], [2, 2]], [3, 4, 5])
        assert_raises(ValueError, leslie, [3, 4, 5], [[1, 1], [2, 2]])
        assert_raises(ValueError, leslie, [1, 2], [1, 2])
        assert_raises(ValueError, leslie, [1], [])

def test_basic(self):
        a = leslie([1, 2, 3], [0.25, 0.5])
        expected = array([[1.0, 2.0, 3.0],
                          [0.25, 0.0, 0.0],
                          [0.0, 0.5, 0.0]])
        assert_array_equal(a, expected)

class TestCompanion(object):

def test_bad_shapes(self):
        assert_raises(ValueError, companion, [[1, 1], [2, 2]])
        assert_raises(ValueError, companion, [0, 4, 5])
        assert_raises(ValueError, companion, [1])
        assert_raises(ValueError, companion, [])

def test_basic(self):
        c = companion([1, 2, 3])
        expected = array([
            [-2.0, -3.0],
            [1.0, 0.0]])
        assert_array_equal(c, expected)

c = companion([2.0, 5.0, -10.0])
        expected = array([
            [-2.5, 5.0],
            [1.0, 0.0]])
        assert_array_equal(c, expected)

class TestBlockDiag:
    def test_basic(self):
        x = block_diag(eye(2), [[1, 2], [3, 4], [5, 6]], [[1, 2, 3]])
        assert_array_equal(x, [[1, 0, 0, 0, 0, 0, 0],
                               [0, 1, 0, 0, 0, 0, 0],
                               [0, 0, 1, 2, 0, 0, 0],
                               [0, 0, 3, 4, 0, 0, 0],
                               [0, 0, 5, 6, 0, 0, 0],
                               [0, 0, 0, 0, 1, 2, 3]])

def test_dtype(self):
        x = block_diag([[1.5]])
        assert_equal(x.dtype, float)

x = block_diag([[True]])
        assert_equal(x.dtype, bool)

def test_mixed_dtypes(self):
        actual = block_diag([[1]], [[1j]])
        desired = np.array([[1, 0], [0, 1j]])
        assert_array_equal(actual, desired)

def test_scalar_and_1d_args(self):
        a = block_diag(1)
        assert_equal(a.shape, (1, 1))
        assert_array_equal(a, [[1]])

a = block_diag([2, 3], 4)
        assert_array_equal(a, [[2, 3, 0], [0, 0, 4]])

def test_bad_arg(self):
        assert_raises(ValueError, block_diag, [[[1]]])

def test_no_args(self):
        a = block_diag()
        assert_equal(a.ndim, 2)
        assert_equal(a.nbytes, 0)

def test_empty_matrix_arg(self):
        # regression test for gh-4596: check the shape of the result
        # for empty matrix inputs. Empty matrices are no longer ignored
        # (gh-4908) it is viewed as a shape (1, 0) matrix.
        a = block_diag([[1, 0], [0, 1]],
                       [],
                       [[2, 3], [4, 5], [6, 7]])
        assert_array_equal(a, [[1, 0, 0, 0],
                               [0, 1, 0, 0],
                               [0, 0, 0, 0],
                               [0, 0, 2, 3],
                               [0, 0, 4, 5],
                               [0, 0, 6, 7]])

def test_zerosized_matrix_arg(self):
        # test for gh-4908: check the shape of the result for
        # zero-sized matrix inputs, i.e. matrices with shape (0,n) or (n,0).
        # note that [[]] takes shape (1,0)
        a = block_diag([[1, 0], [0, 1]],
                       [[]],
                       [[2, 3], [4, 5], [6, 7]],
                       np.zeros([0, 2], dtype='int32'))
        assert_array_equal(a, [[1, 0, 0, 0, 0, 0],
                               [0, 1, 0, 0, 0, 0],
                               [0, 0, 0, 0, 0, 0],
                               [0, 0, 2, 3, 0, 0],
                               [0, 0, 4, 5, 0, 0],
                               [0, 0, 6, 7, 0, 0]])

class TestKron:

def test_basic(self):

a = kron(array([[1, 2], [3, 4]]), array([[1, 1, 1]]))
        assert_array_equal(a, array([[1, 1, 1, 2, 2, 2],
                                     [3, 3, 3, 4, 4, 4]]))

m1 = array([[1, 2], [3, 4]])
        m2 = array([[10], [11]])
        a = kron(m1, m2)
        expected = array([[10, 20],
                          [11, 22],
                          [30, 40],
                          [33, 44]])
        assert_array_equal(a, expected)

class TestHelmert(object):

def test_orthogonality(self):
        for n in range(1, 7):
            H = helmert(n, full=True)
            Id = np.eye(n)
            assert_allclose(H.dot(H.T), Id, atol=1e-12)
            assert_allclose(H.T.dot(H), Id, atol=1e-12)

def test_subspace(self):
        for n in range(2, 7):
            H_full = helmert(n, full=True)
            H_partial = helmert(n)
            for U in H_full[1:, :].T, H_partial.T:
                C = np.eye(n) - np.full((n, n), 1 / n)
                assert_allclose(U.dot(U.T), C)
                assert_allclose(U.T.dot(U), np.eye(n-1), atol=1e-12)

class TestHilbert(object):

def test_basic(self):
        h3 = array([[1.0, 1/2., 1/3.],
                    [1/2., 1/3., 1/4.],
                    [1/3., 1/4., 1/5.]])
        assert_array_almost_equal(hilbert(3), h3)

assert_array_equal(hilbert(1), [[1.0]])

h0 = hilbert(0)
        assert_equal(h0.shape, (0, 0))

class TestInvHilbert(object):

def test_basic(self):
        invh1 = array([[1]])
        assert_array_equal(invhilbert(1, exact=True), invh1)
        assert_array_equal(invhilbert(1), invh1)

invh2 = array([[4, -6],
                       [-6, 12]])
        assert_array_equal(invhilbert(2, exact=True), invh2)
        assert_array_almost_equal(invhilbert(2), invh2)

invh3 = array([[9, -36, 30],
                       [-36, 192, -180],
                       [30, -180, 180]])
        assert_array_equal(invhilbert(3, exact=True), invh3)
        assert_array_almost_equal(invhilbert(3), invh3)

invh4 = array([[16, -120, 240, -140],
                       [-120, 1200, -2700, 1680],
                       [240, -2700, 6480, -4200],
                       [-140, 1680, -4200, 2800]])
        assert_array_equal(invhilbert(4, exact=True), invh4)
        assert_array_almost_equal(invhilbert(4), invh4)

invh5 = array([[25, -300, 1050, -1400, 630],
                       [-300, 4800, -18900, 26880, -12600],
                       [1050, -18900, 79380, -117600, 56700],
                       [-1400, 26880, -117600, 179200, -88200],
                       [630, -12600, 56700, -88200, 44100]])
        assert_array_equal(invhilbert(5, exact=True), invh5)
        assert_array_almost_equal(invhilbert(5), invh5)

invh17 = array([
            [289, -41616, 1976760, -46124400, 629598060, -5540462928,
             33374693352, -143034400080, 446982500250, -1033026222800,
             1774926873720, -2258997839280, 2099709530100, -1384423866000,
             613101997800, -163493866080, 19835652870],
            [-41616, 7990272, -426980160, 10627061760, -151103534400,
             1367702848512, -8410422724704, 36616806420480, -115857864064800,
             270465047424000, -468580694662080, 600545887119360,
             -561522320049600, 372133135180800, -165537539406000,
             44316454993920, -5395297580640],
            [1976760, -426980160, 24337869120, -630981792000, 9228108708000,
             -85267724461920, 532660105897920, -2348052711713280,
             7504429831470000, -17664748409880000, 30818191841236800,
             -39732544853164800, 37341234283298400, -24857330514030000,
             11100752642520000, -2982128117299200, 364182586693200],
            [-46124400, 10627061760, -630981792000, 16826181120000,
             -251209625940000, 2358021022156800, -14914482965141760,
             66409571644416000, -214015221119700000, 507295338950400000,
             -890303319857952000, 1153715376477081600, -1089119333262870000,
             727848632044800000, -326170262829600000, 87894302404608000,
             -10763618673376800],
            [629598060, -151103534400, 9228108708000,
             -251209625940000, 3810012660090000, -36210360321495360,
             231343968720664800, -1038687206500944000, 3370739732635275000,
             -8037460526495400000, 14178080368737885600, -18454939322943942000,
             17489975175339030000, -11728977435138600000, 5272370630081100000,
             -1424711708039692800, 174908803442373000],
            [-5540462928, 1367702848512, -85267724461920, 2358021022156800,
             -36210360321495360, 347619459086355456, -2239409617216035264,
             10124803292907663360, -33052510749726468000,
             79217210949138662400, -140362995650505067440,
             183420385176741672960, -174433352415381259200,
             117339159519533952000, -52892422160973595200,
             14328529177999196160, -1763080738699119840],
            [33374693352, -8410422724704, 532660105897920,
             -14914482965141760, 231343968720664800, -2239409617216035264,
             14527452132196331328, -66072377044391477760,
             216799987176909536400, -521925895055522958000,
             928414062734059661760, -1217424500995626443520,
             1161358898976091015200, -783401860847777371200,
             354015418167362952000, -96120549902411274240,
             11851820521255194480],
            [-143034400080, 36616806420480, -2348052711713280,
             66409571644416000, -1038687206500944000, 10124803292907663360,
             -66072377044391477760, 302045152202932469760,
             -995510145200094810000, 2405996923185123840000,
             -4294704507885446054400, 5649058909023744614400,
             -5403874060541811254400, 3654352703663101440000,
             -1655137020003255360000, 450325202737117593600,
             -55630994283442749600],
            [446982500250, -115857864064800, 7504429831470000,
             -214015221119700000, 3370739732635275000, -33052510749726468000,
             216799987176909536400, -995510145200094810000,
             3293967392206196062500, -7988661659013106500000,
             14303908928401362270000, -18866974090684772052000,
             18093328327706957325000, -12263364009096700500000,
             5565847995255512250000, -1517208935002984080000,
             187754605706619279900],
            [-1033026222800, 270465047424000, -17664748409880000,
             507295338950400000, -8037460526495400000, 79217210949138662400,
             -521925895055522958000, 2405996923185123840000,
             -7988661659013106500000, 19434404971634224000000,
             -34894474126569249192000, 46141453390504792320000,
             -44349976506971935800000, 30121928988527376000000,
             -13697025107665828500000, 3740200989399948902400,
             -463591619028689580000],
            [1774926873720, -468580694662080,
             30818191841236800, -890303319857952000, 14178080368737885600,
             -140362995650505067440, 928414062734059661760,
             -4294704507885446054400, 14303908928401362270000,
             -34894474126569249192000, 62810053427824648545600,
             -83243376594051600326400, 80177044485212743068000,
             -54558343880470209780000, 24851882355348879230400,
             -6797096028813368678400, 843736746632215035600],
            [-2258997839280, 600545887119360, -39732544853164800,
             1153715376477081600, -18454939322943942000, 183420385176741672960,
             -1217424500995626443520, 5649058909023744614400,
             -18866974090684772052000, 46141453390504792320000,
             -83243376594051600326400, 110552468520163390156800,
             -106681852579497947388000, 72720410752415168870400,
             -33177973900974346080000, 9087761081682520473600,
             -1129631016152221783200],
            [2099709530100, -561522320049600, 37341234283298400,
             -1089119333262870000, 17489975175339030000,
             -174433352415381259200, 1161358898976091015200,
             -5403874060541811254400, 18093328327706957325000,
             -44349976506971935800000, 80177044485212743068000,
             -106681852579497947388000, 103125790826848015808400,
             -70409051543137015800000, 32171029219823375700000,
             -8824053728865840192000, 1098252376814660067000],
            [-1384423866000, 372133135180800,
             -24857330514030000, 727848632044800000, -11728977435138600000,
             117339159519533952000, -783401860847777371200,
             3654352703663101440000, -12263364009096700500000,
             30121928988527376000000, -54558343880470209780000,
             72720410752415168870400, -70409051543137015800000,
             48142941226076592000000, -22027500987368499000000,
             6049545098753157120000, -753830033789944188000],
            [613101997800, -165537539406000,
             11100752642520000, -326170262829600000, 5272370630081100000,
             -52892422160973595200, 354015418167362952000,
             -1655137020003255360000, 5565847995255512250000,
             -13697025107665828500000, 24851882355348879230400,
             -33177973900974346080000, 32171029219823375700000,
             -22027500987368499000000, 10091416708498869000000,
             -2774765838662800128000, 346146444087219270000],
            [-163493866080, 44316454993920, -2982128117299200,
             87894302404608000, -1424711708039692800,
             14328529177999196160, -96120549902411274240,
             450325202737117593600, -1517208935002984080000,
             3740200989399948902400, -6797096028813368678400,
             9087761081682520473600, -8824053728865840192000,
             6049545098753157120000, -2774765838662800128000,
             763806510427609497600, -95382575704033754400],
            [19835652870, -5395297580640, 364182586693200, -10763618673376800,
             174908803442373000, -1763080738699119840, 11851820521255194480,
             -55630994283442749600, 187754605706619279900,
             -463591619028689580000, 843736746632215035600,
             -1129631016152221783200, 1098252376814660067000,
             -753830033789944188000, 346146444087219270000,
             -95382575704033754400, 11922821963004219300]
            ])
        assert_array_equal(invhilbert(17, exact=True), invh17)
        assert_allclose(invhilbert(17), invh17.astype(float), rtol=1e-12)

def test_inverse(self):
        for n in xrange(1, 10):
            a = hilbert(n)
            b = invhilbert(n)
            # The Hilbert matrix is increasingly badly conditioned,
            # so take that into account in the test
            c = cond(a)
            assert_allclose(a.dot(b), eye(n), atol=1e-15*c, rtol=1e-15*c)

class TestPascal(object):

cases = [
        (1, array([[1]]), array([[1]])),
        (2, array([[1, 1],
                   [1, 2]]),
            array([[1, 0],
                   [1, 1]])),
        (3, array([[1, 1, 1],
                   [1, 2, 3],
                   [1, 3, 6]]),
            array([[1, 0, 0],
                   [1, 1, 0],
                   [1, 2, 1]])),
        (4, array([[1, 1, 1, 1],
                   [1, 2, 3, 4],
                   [1, 3, 6, 10],
                   [1, 4, 10, 20]]),
            array([[1, 0, 0, 0],
                   [1, 1, 0, 0],
                   [1, 2, 1, 0],
                   [1, 3, 3, 1]])),
    ]

def check_case(self, n, sym, low):
        assert_array_equal(pascal(n), sym)
        assert_array_equal(pascal(n, kind='lower'), low)
        assert_array_equal(pascal(n, kind='upper'), low.T)
        assert_array_almost_equal(pascal(n, exact=False), sym)
        assert_array_almost_equal(pascal(n, exact=False, kind='lower'), low)
        assert_array_almost_equal(pascal(n, exact=False, kind='upper'), low.T)

def test_cases(self):
        for n, sym, low in self.cases:
            self.check_case(n, sym, low)

def test_big(self):
        p = pascal(50)
        assert_equal(p[-1, -1], comb(98, 49, exact=True))

def test_threshold(self):
        # Regression test.  An early version of `pascal` returned an
        # array of type np.uint64 for n=35, but that data type is too small
        # to hold p[-1, -1].  The second assert_equal below would fail
        # because p[-1, -1] overflowed.
        p = pascal(34)
        assert_equal(2*p.item(-1, -2), p.item(-1, -1), err_msg="n = 34")
        p = pascal(35)
        assert_equal(2*p.item(-1, -2), p.item(-1, -1), err_msg="n = 35")

def test_invpascal():

def check_invpascal(n, kind, exact):
        ip = invpascal(n, kind=kind, exact=exact)
        p = pascal(n, kind=kind, exact=exact)
        # Matrix-multiply ip and p, and check that we get the identity matrix.
        # We can't use the simple expression e = ip.dot(p), because when
        # n < 35 and exact is True, p.dtype is np.uint64 and ip.dtype is
        # np.int64. The product of those dtypes is np.float64, which loses
        # precision when n is greater than 18.  Instead we'll cast both to
        # object arrays, and then multiply.
        e = ip.astype(object).dot(p.astype(object))
        assert_array_equal(e, eye(n), err_msg="n=%d  kind=%r exact=%r" %
                                              (n, kind, exact))

kinds = ['symmetric', 'lower', 'upper']

ns = [1, 2, 5, 18]
    for n in ns:
        for kind in kinds:
            for exact in [True, False]:
                check_invpascal(n, kind, exact)

ns = [19, 34, 35, 50]
    for n in ns:
        for kind in kinds:
            check_invpascal(n, kind, True)

def test_dft():
    m = dft(2)
    expected = array([[1.0, 1.0], [1.0, -1.0]])
    assert_array_almost_equal(m, expected)
    m = dft(2, scale='n')
    assert_array_almost_equal(m, expected/2.0)
    m = dft(2, scale='sqrtn')
    assert_array_almost_equal(m, expected/sqrt(2.0))

x = array([0, 1, 2, 3, 4, 5, 0, 1])
    m = dft(8)
    mx = m.dot(x)
    fx = fft(x)
    assert_array_almost_equal(mx, fx)

def test_fiedler():
    f = fiedler([])
    assert_equal(f.size, 0)
    f = fiedler([123.])
    assert_array_equal(f, np.array([[0.]]))
    f = fiedler(np.arange(1, 7))
    des = np.array([[0, 1, 2, 3, 4, 5],
                    [1, 0, 1, 2, 3, 4],
                    [2, 1, 0, 1, 2, 3],
                    [3, 2, 1, 0, 1, 2],
                    [4, 3, 2, 1, 0, 1],
                    [5, 4, 3, 2, 1, 0]])
    assert_array_equal(f, des)

def test_fiedler_companion():
    fc = fiedler_companion([])
    assert_equal(fc.size, 0)
    fc = fiedler_companion([1.])
    assert_equal(fc.size, 0)
    fc = fiedler_companion([1., 2.])
    assert_array_equal(fc, np.array([[-2.]]))
    fc = fiedler_companion([1e-12, 2., 3.])
    assert_array_almost_equal(fc, companion([1e-12, 2., 3.]))
    with assert_raises(ValueError):
        fiedler_companion([0, 1, 2])
    fc = fiedler_companion([1., -16., 86., -176., 105.])
    assert_array_almost_equal(eigvals(fc),
                              np.array([7., 5., 3., 1.]))