EVOLUTION-MANAGER

Edit File: test_interpnd.py

from __future__ import division, print_function, absolute_import

import os

import numpy as np
from numpy.testing import assert_equal, assert_allclose, assert_almost_equal
from pytest import raises as assert_raises
import pytest
from scipy._lib._numpy_compat import suppress_warnings

import scipy.interpolate.interpnd as interpnd
import scipy.spatial.qhull as qhull

import pickle

def data_file(basename):
    return os.path.join(os.path.abspath(os.path.dirname(__file__)),
                        'data', basename)

class TestLinearNDInterpolation(object):
    def test_smoketest(self):
        # Test at single points
        x = np.array([(0,0), (-0.5,-0.5), (-0.5,0.5), (0.5, 0.5), (0.25, 0.3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)

yi = interpnd.LinearNDInterpolator(x, y)(x)
        assert_almost_equal(y, yi)

def test_smoketest_alternate(self):
        # Test at single points, alternate calling convention
        x = np.array([(0,0), (-0.5,-0.5), (-0.5,0.5), (0.5, 0.5), (0.25, 0.3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)

yi = interpnd.LinearNDInterpolator((x[:,0], x[:,1]), y)(x[:,0], x[:,1])
        assert_almost_equal(y, yi)

def test_complex_smoketest(self):
        # Test at single points
        x = np.array([(0,0), (-0.5,-0.5), (-0.5,0.5), (0.5, 0.5), (0.25, 0.3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)
        y = y - 3j*y

yi = interpnd.LinearNDInterpolator(x, y)(x)
        assert_almost_equal(y, yi)

def test_tri_input(self):
        # Test at single points
        x = np.array([(0,0), (-0.5,-0.5), (-0.5,0.5), (0.5, 0.5), (0.25, 0.3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)
        y = y - 3j*y

tri = qhull.Delaunay(x)
        yi = interpnd.LinearNDInterpolator(tri, y)(x)
        assert_almost_equal(y, yi)

def test_square(self):
        # Test barycentric interpolation on a square against a manual
        # implementation

points = np.array([(0,0), (0,1), (1,1), (1,0)], dtype=np.double)
        values = np.array([1., 2., -3., 5.], dtype=np.double)

# NB: assume triangles (0, 1, 3) and (1, 2, 3)
        #
        #  1----2
        #  | \  |
        #  |  \ |
        #  0----3

def ip(x, y):
            t1 = (x + y <= 1)
            t2 = ~t1

x1 = x[t1]
            y1 = y[t1]

x2 = x[t2]
            y2 = y[t2]

z = 0*x

z[t1] = (values[0]*(1 - x1 - y1)
                     + values[1]*y1
                     + values[3]*x1)

z[t2] = (values[2]*(x2 + y2 - 1)
                     + values[1]*(1 - x2)
                     + values[3]*(1 - y2))
            return z

xx, yy = np.broadcast_arrays(np.linspace(0, 1, 14)[:,None],
                                     np.linspace(0, 1, 14)[None,:])
        xx = xx.ravel()
        yy = yy.ravel()

xi = np.array([xx, yy]).T.copy()
        zi = interpnd.LinearNDInterpolator(points, values)(xi)

assert_almost_equal(zi, ip(xx, yy))

def test_smoketest_rescale(self):
        # Test at single points
        x = np.array([(0, 0), (-5, -5), (-5, 5), (5, 5), (2.5, 3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)

yi = interpnd.LinearNDInterpolator(x, y, rescale=True)(x)
        assert_almost_equal(y, yi)

def test_square_rescale(self):
        # Test barycentric interpolation on a rectangle with rescaling
        # agaings the same implementation without rescaling

points = np.array([(0,0), (0,100), (10,100), (10,0)], dtype=np.double)
        values = np.array([1., 2., -3., 5.], dtype=np.double)

xx, yy = np.broadcast_arrays(np.linspace(0, 10, 14)[:,None],
                                     np.linspace(0, 100, 14)[None,:])
        xx = xx.ravel()
        yy = yy.ravel()
        xi = np.array([xx, yy]).T.copy()
        zi = interpnd.LinearNDInterpolator(points, values)(xi)
        zi_rescaled = interpnd.LinearNDInterpolator(points, values,
                rescale=True)(xi)

assert_almost_equal(zi, zi_rescaled)

def test_tripoints_input_rescale(self):
        # Test at single points
        x = np.array([(0,0), (-5,-5), (-5,5), (5, 5), (2.5, 3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)
        y = y - 3j*y

tri = qhull.Delaunay(x)
        yi = interpnd.LinearNDInterpolator(tri.points, y)(x)
        yi_rescale = interpnd.LinearNDInterpolator(tri.points, y,
                rescale=True)(x)
        assert_almost_equal(yi, yi_rescale)

def test_tri_input_rescale(self):
        # Test at single points
        x = np.array([(0,0), (-5,-5), (-5,5), (5, 5), (2.5, 3)],
                     dtype=np.double)
        y = np.arange(x.shape[0], dtype=np.double)
        y = y - 3j*y

tri = qhull.Delaunay(x)
        match = ("Rescaling is not supported when passing a "
                 "Delaunay triangulation as ``points``.")
        with pytest.raises(ValueError, match=match):
            interpnd.LinearNDInterpolator(tri, y, rescale=True)(x)

def test_pickle(self):
        # Test at single points
        np.random.seed(1234)
        x = np.random.rand(30, 2)
        y = np.random.rand(30) + 1j*np.random.rand(30)

ip = interpnd.LinearNDInterpolator(x, y)
        ip2 = pickle.loads(pickle.dumps(ip))

assert_almost_equal(ip(0.5, 0.5), ip2(0.5, 0.5))

class TestEstimateGradients2DGlobal(object):
    def test_smoketest(self):
        x = np.array([(0, 0), (0, 2),
                      (1, 0), (1, 2), (0.25, 0.75), (0.6, 0.8)], dtype=float)
        tri = qhull.Delaunay(x)

# Should be exact for linear functions, independent of triangulation

funcs = [
            (lambda x, y: 0*x + 1, (0, 0)),
            (lambda x, y: 0 + x, (1, 0)),
            (lambda x, y: -2 + y, (0, 1)),
            (lambda x, y: 3 + 3*x + 14.15*y, (3, 14.15))
        ]

for j, (func, grad) in enumerate(funcs):
            z = func(x[:,0], x[:,1])
            dz = interpnd.estimate_gradients_2d_global(tri, z, tol=1e-6)

assert_equal(dz.shape, (6, 2))
            assert_allclose(dz, np.array(grad)[None,:] + 0*dz,
                            rtol=1e-5, atol=1e-5, err_msg="item %d" % j)

def test_regression_2359(self):
        # Check regression --- for certain point sets, gradient
        # estimation could end up in an infinite loop
        points = np.load(data_file('estimate_gradients_hang.npy'))
        values = np.random.rand(points.shape[0])
        tri = qhull.Delaunay(points)

# This should not hang
        with suppress_warnings() as sup:
            sup.filter(interpnd.GradientEstimationWarning,
                       "Gradient estimation did not converge")
            interpnd.estimate_gradients_2d_global(tri, values, maxiter=1)

class TestCloughTocher2DInterpolator(object):

def _check_accuracy(self, func, x=None, tol=1e-6, alternate=False, rescale=False, **kw):
        np.random.seed(1234)
        if x is None:
            x = np.array([(0, 0), (0, 1),
                          (1, 0), (1, 1), (0.25, 0.75), (0.6, 0.8),
                          (0.5, 0.2)],
                         dtype=float)

if not alternate:
            ip = interpnd.CloughTocher2DInterpolator(x, func(x[:,0], x[:,1]),
                                                     tol=1e-6, rescale=rescale)
        else:
            ip = interpnd.CloughTocher2DInterpolator((x[:,0], x[:,1]),
                                                     func(x[:,0], x[:,1]),
                                                     tol=1e-6, rescale=rescale)

p = np.random.rand(50, 2)

if not alternate:
            a = ip(p)
        else:
            a = ip(p[:,0], p[:,1])
        b = func(p[:,0], p[:,1])

try:
            assert_allclose(a, b, **kw)
        except AssertionError:
            print(abs(a - b))
            print(ip.grad)
            raise

def test_linear_smoketest(self):
        # Should be exact for linear functions, independent of triangulation
        funcs = [
            lambda x, y: 0*x + 1,
            lambda x, y: 0 + x,
            lambda x, y: -2 + y,
            lambda x, y: 3 + 3*x + 14.15*y,
        ]

for j, func in enumerate(funcs):
            self._check_accuracy(func, tol=1e-13, atol=1e-7, rtol=1e-7,
                                 err_msg="Function %d" % j)
            self._check_accuracy(func, tol=1e-13, atol=1e-7, rtol=1e-7,
                                 alternate=True,
                                 err_msg="Function (alternate) %d" % j)
            # check rescaling
            self._check_accuracy(func, tol=1e-13, atol=1e-7, rtol=1e-7,
                                 err_msg="Function (rescaled) %d" % j, rescale=True)
            self._check_accuracy(func, tol=1e-13, atol=1e-7, rtol=1e-7,
                                 alternate=True, rescale=True,
                                 err_msg="Function (alternate, rescaled) %d" % j)

def test_quadratic_smoketest(self):
        # Should be reasonably accurate for quadratic functions
        funcs = [
            lambda x, y: x**2,
            lambda x, y: y**2,
            lambda x, y: x**2 - y**2,
            lambda x, y: x*y,
        ]

for j, func in enumerate(funcs):
            self._check_accuracy(func, tol=1e-9, atol=0.22, rtol=0,
                                 err_msg="Function %d" % j)
            self._check_accuracy(func, tol=1e-9, atol=0.22, rtol=0,
                                 err_msg="Function %d" % j, rescale=True)

tri = qhull.Delaunay(x)
        yi = interpnd.CloughTocher2DInterpolator(tri, y)(x)
        assert_almost_equal(y, yi)

tri = qhull.Delaunay(x)
        yi = interpnd.CloughTocher2DInterpolator(tri.points, y)(x)
        yi_rescale = interpnd.CloughTocher2DInterpolator(tri.points, y, rescale=True)(x)
        assert_almost_equal(yi, yi_rescale)

def test_dense(self):
        # Should be more accurate for dense meshes
        funcs = [
            lambda x, y: x**2,
            lambda x, y: y**2,
            lambda x, y: x**2 - y**2,
            lambda x, y: x*y,
            lambda x, y: np.cos(2*np.pi*x)*np.sin(2*np.pi*y)
        ]

np.random.seed(4321)  # use a different seed than the check!
        grid = np.r_[np.array([(0,0), (0,1), (1,0), (1,1)], dtype=float),
                     np.random.rand(30*30, 2)]

for j, func in enumerate(funcs):
            self._check_accuracy(func, x=grid, tol=1e-9, atol=5e-3, rtol=1e-2,
                                 err_msg="Function %d" % j)
            self._check_accuracy(func, x=grid, tol=1e-9, atol=5e-3, rtol=1e-2,
                                 err_msg="Function %d" % j, rescale=True)

def test_wrong_ndim(self):
        x = np.random.randn(30, 3)
        y = np.random.randn(30)
        assert_raises(ValueError, interpnd.CloughTocher2DInterpolator, x, y)

def test_pickle(self):
        # Test at single points
        np.random.seed(1234)
        x = np.random.rand(30, 2)
        y = np.random.rand(30) + 1j*np.random.rand(30)

ip = interpnd.CloughTocher2DInterpolator(x, y)
        ip2 = pickle.loads(pickle.dumps(ip))

assert_almost_equal(ip(0.5, 0.5), ip2(0.5, 0.5))

def test_boundary_tri_symmetry(self):
        # Interpolation at neighbourless triangles should retain
        # symmetry with mirroring the triangle.

# Equilateral triangle
        points = np.array([(0, 0), (1, 0), (0.5, np.sqrt(3)/2)])
        values = np.array([1, 0, 0])

ip = interpnd.CloughTocher2DInterpolator(points, values)

# Set gradient to zero at vertices
        ip.grad[...] = 0

# Interpolation should be symmetric vs. bisector
        alpha = 0.3
        p1 = np.array([0.5 * np.cos(alpha), 0.5 * np.sin(alpha)])
        p2 = np.array([0.5 * np.cos(np.pi/3 - alpha), 0.5 * np.sin(np.pi/3 - alpha)])

v1 = ip(p1)
        v2 = ip(p2)
        assert_allclose(v1, v2)

# ... and affine invariant
        np.random.seed(1)
        A = np.random.randn(2, 2)
        b = np.random.randn(2)

points = A.dot(points.T).T + b[None,:]
        p1 = A.dot(p1) + b
        p2 = A.dot(p2) + b

ip = interpnd.CloughTocher2DInterpolator(points, values)
        ip.grad[...] = 0

w1 = ip(p1)
        w2 = ip(p2)
        assert_allclose(w1, v1)
        assert_allclose(w2, v2)