EVOLUTION-MANAGER

Edit File: art3d.py

# art3d.py, original mplot3d version by John Porter
# Parts rewritten by Reinier Heeres <reinier@heeres.eu>
# Minor additions by Ben Axelrod <baxelrod@coroware.com>

"""
Module containing 3D artist code and functions to convert 2D
artists into 3D versions which can be added to an Axes3D.
"""

import math

import numpy as np

from matplotlib import (
    artist, colors as mcolors, lines, text as mtext, path as mpath)
from matplotlib.collections import (
    LineCollection, PolyCollection, PatchCollection, PathCollection)
from matplotlib.colors import Normalize
from matplotlib.patches import Patch
from . import proj3d

def _norm_angle(a):
    """Return the given angle normalized to -180 < *a* <= 180 degrees."""
    a = (a + 360) % 360
    if a > 180:
        a = a - 360
    return a

def _norm_text_angle(a):
    """Return the given angle normalized to -90 < *a* <= 90 degrees."""
    a = (a + 180) % 180
    if a > 90:
        a = a - 180
    return a

def get_dir_vector(zdir):
    """
    Return a direction vector.

Parameters
    ----------
    zdir : {'x', 'y', 'z', None, 3-tuple}
        The direction. Possible values are:
        - 'x': equivalent to (1, 0, 0)
        - 'y': equivalent to (0, 1, 0)
        - 'z': equivalent to (0, 0, 1)
        - *None*: equivalent to (0, 0, 0)
        - an iterable (x, y, z) is returned unchanged.

Returns
    -------
    x, y, z : array-like
        The direction vector. This is either a numpy.array or *zdir* itself if
        *zdir* is already a length-3 iterable.

"""
    if zdir == 'x':
        return np.array((1, 0, 0))
    elif zdir == 'y':
        return np.array((0, 1, 0))
    elif zdir == 'z':
        return np.array((0, 0, 1))
    elif zdir is None:
        return np.array((0, 0, 0))
    elif np.iterable(zdir) and len(zdir) == 3:
        return zdir
    else:
        raise ValueError("'x', 'y', 'z', None or vector of length 3 expected")

class Text3D(mtext.Text):
    """
    Text object with 3D position and direction.

Parameters
    ----------
    x, y, z
        The position of the text.
    text : str
        The text string to display.
    zdir : {'x', 'y', 'z', None, 3-tuple}
        The direction of the text. See `.get_dir_vector` for a description of
        the values.

Other Parameters
    ----------------
    **kwargs
         All other parameters are passed on to `~matplotlib.text.Text`.
   """

def __init__(self, x=0, y=0, z=0, text='', zdir='z', **kwargs):
        mtext.Text.__init__(self, x, y, text, **kwargs)
        self.set_3d_properties(z, zdir)

def set_3d_properties(self, z=0, zdir='z'):
        x, y = self.get_position()
        self._position3d = np.array((x, y, z))
        self._dir_vec = get_dir_vector(zdir)
        self.stale = True

@artist.allow_rasterization
    def draw(self, renderer):
        proj = proj3d.proj_trans_points(
            [self._position3d, self._position3d + self._dir_vec], renderer.M)
        dx = proj[0][1] - proj[0][0]
        dy = proj[1][1] - proj[1][0]
        angle = math.degrees(math.atan2(dy, dx))
        self.set_position((proj[0][0], proj[1][0]))
        self.set_rotation(_norm_text_angle(angle))
        mtext.Text.draw(self, renderer)
        self.stale = False

def get_tightbbox(self, renderer):
        # Overwriting the 2d Text behavior which is not valid for 3d.
        # For now, just return None to exclude from layout calculation.
        return None

def text_2d_to_3d(obj, z=0, zdir='z'):
    """Convert a Text to a Text3D object."""
    obj.__class__ = Text3D
    obj.set_3d_properties(z, zdir)

class Line3D(lines.Line2D):
    """
    3D line object.
    """

def __init__(self, xs, ys, zs, *args, **kwargs):
        """
        Keyword arguments are passed onto :func:`~matplotlib.lines.Line2D`.
        """
        lines.Line2D.__init__(self, [], [], *args, **kwargs)
        self._verts3d = xs, ys, zs

def set_3d_properties(self, zs=0, zdir='z'):
        xs = self.get_xdata()
        ys = self.get_ydata()
        zs = np.broadcast_to(zs, xs.shape)
        self._verts3d = juggle_axes(xs, ys, zs, zdir)
        self.stale = True

def set_data_3d(self, *args):
        """
        Set the x, y and z data

Parameters
        ----------
        x : array-like
            The x-data to be plotted.
        y : array-like
            The y-data to be plotted.
        z : array-like
            The z-data to be plotted.

Notes
        -----
        Accepts x, y, z arguments or a single array-like (x, y, z)
        """
        if len(args) == 1:
            self._verts3d = args[0]
        else:
            self._verts3d = args
        self.stale = True

def get_data_3d(self):
        """
        Get the current data

Returns
        -------
        verts3d : length-3 tuple or array-like
            The current data as a tuple or array-like.
        """
        return self._verts3d

@artist.allow_rasterization
    def draw(self, renderer):
        xs3d, ys3d, zs3d = self._verts3d
        xs, ys, zs = proj3d.proj_transform(xs3d, ys3d, zs3d, renderer.M)
        self.set_data(xs, ys)
        lines.Line2D.draw(self, renderer)
        self.stale = False

def line_2d_to_3d(line, zs=0, zdir='z'):
    """Convert a 2D line to 3D."""

line.__class__ = Line3D
    line.set_3d_properties(zs, zdir)

def _path_to_3d_segment(path, zs=0, zdir='z'):
    """Convert a path to a 3D segment."""

zs = np.broadcast_to(zs, len(path))
    pathsegs = path.iter_segments(simplify=False, curves=False)
    seg = [(x, y, z) for (((x, y), code), z) in zip(pathsegs, zs)]
    seg3d = [juggle_axes(x, y, z, zdir) for (x, y, z) in seg]
    return seg3d

def _paths_to_3d_segments(paths, zs=0, zdir='z'):
    """Convert paths from a collection object to 3D segments."""

zs = np.broadcast_to(zs, len(paths))
    segs = [_path_to_3d_segment(path, pathz, zdir)
            for path, pathz in zip(paths, zs)]
    return segs

def _path_to_3d_segment_with_codes(path, zs=0, zdir='z'):
    """Convert a path to a 3D segment with path codes."""

zs = np.broadcast_to(zs, len(path))
    pathsegs = path.iter_segments(simplify=False, curves=False)
    seg_codes = [((x, y, z), code) for ((x, y), code), z in zip(pathsegs, zs)]
    if seg_codes:
        seg, codes = zip(*seg_codes)
        seg3d = [juggle_axes(x, y, z, zdir) for (x, y, z) in seg]
    else:
        seg3d = []
        codes = []
    return seg3d, list(codes)

def _paths_to_3d_segments_with_codes(paths, zs=0, zdir='z'):
    """
    Convert paths from a collection object to 3D segments with path codes.
    """

zs = np.broadcast_to(zs, len(paths))
    segments_codes = [_path_to_3d_segment_with_codes(path, pathz, zdir)
                      for path, pathz in zip(paths, zs)]
    if segments_codes:
        segments, codes = zip(*segments_codes)
    else:
        segments, codes = [], []
    return list(segments), list(codes)

class Line3DCollection(LineCollection):
    """
    A collection of 3D lines.
    """

def set_sort_zpos(self, val):
        """Set the position to use for z-sorting."""
        self._sort_zpos = val
        self.stale = True

def set_segments(self, segments):
        """
        Set 3D segments.
        """
        self._segments3d = segments
        LineCollection.set_segments(self, [])

def do_3d_projection(self, renderer):
        """
        Project the points according to renderer matrix.
        """
        xyslist = [
            proj3d.proj_trans_points(points, renderer.M) for points in
            self._segments3d]
        segments_2d = [np.column_stack([xs, ys]) for xs, ys, zs in xyslist]
        LineCollection.set_segments(self, segments_2d)

# FIXME
        minz = 1e9
        for xs, ys, zs in xyslist:
            minz = min(minz, min(zs))
        return minz

@artist.allow_rasterization
    def draw(self, renderer, project=False):
        if project:
            self.do_3d_projection(renderer)
        LineCollection.draw(self, renderer)

def line_collection_2d_to_3d(col, zs=0, zdir='z'):
    """Convert a LineCollection to a Line3DCollection object."""
    segments3d = _paths_to_3d_segments(col.get_paths(), zs, zdir)
    col.__class__ = Line3DCollection
    col.set_segments(segments3d)

class Patch3D(Patch):
    """
    3D patch object.
    """

def __init__(self, *args, zs=(), zdir='z', **kwargs):
        Patch.__init__(self, *args, **kwargs)
        self.set_3d_properties(zs, zdir)

def set_3d_properties(self, verts, zs=0, zdir='z'):
        zs = np.broadcast_to(zs, len(verts))
        self._segment3d = [juggle_axes(x, y, z, zdir)
                           for ((x, y), z) in zip(verts, zs)]
        self._facecolor3d = Patch.get_facecolor(self)

def get_path(self):
        return self._path2d

def get_facecolor(self):
        return self._facecolor2d

def do_3d_projection(self, renderer):
        s = self._segment3d
        xs, ys, zs = zip(*s)
        vxs, vys, vzs, vis = proj3d.proj_transform_clip(xs, ys, zs, renderer.M)
        self._path2d = mpath.Path(np.column_stack([vxs, vys]))
        # FIXME: coloring
        self._facecolor2d = self._facecolor3d
        return min(vzs)

class PathPatch3D(Patch3D):
    """
    3D PathPatch object.
    """

def __init__(self, path, *, zs=(), zdir='z', **kwargs):
        Patch.__init__(self, **kwargs)
        self.set_3d_properties(path, zs, zdir)

def set_3d_properties(self, path, zs=0, zdir='z'):
        Patch3D.set_3d_properties(self, path.vertices, zs=zs, zdir=zdir)
        self._code3d = path.codes

def do_3d_projection(self, renderer):
        s = self._segment3d
        xs, ys, zs = zip(*s)
        vxs, vys, vzs, vis = proj3d.proj_transform_clip(xs, ys, zs, renderer.M)
        self._path2d = mpath.Path(np.column_stack([vxs, vys]), self._code3d)
        # FIXME: coloring
        self._facecolor2d = self._facecolor3d
        return min(vzs)

def _get_patch_verts(patch):
    """Return a list of vertices for the path of a patch."""
    trans = patch.get_patch_transform()
    path = patch.get_path()
    polygons = path.to_polygons(trans)
    if len(polygons):
        return polygons[0]
    else:
        return []

def patch_2d_to_3d(patch, z=0, zdir='z'):
    """Convert a Patch to a Patch3D object."""
    verts = _get_patch_verts(patch)
    patch.__class__ = Patch3D
    patch.set_3d_properties(verts, z, zdir)

def pathpatch_2d_to_3d(pathpatch, z=0, zdir='z'):
    """Convert a PathPatch to a PathPatch3D object."""
    path = pathpatch.get_path()
    trans = pathpatch.get_patch_transform()

mpath = trans.transform_path(path)
    pathpatch.__class__ = PathPatch3D
    pathpatch.set_3d_properties(mpath, z, zdir)

class Patch3DCollection(PatchCollection):
    """
    A collection of 3D patches.
    """

def __init__(self, *args, zs=0, zdir='z', depthshade=True, **kwargs):
        """
        Create a collection of flat 3D patches with its normal vector
        pointed in *zdir* direction, and located at *zs* on the *zdir*
        axis. 'zs' can be a scalar or an array-like of the same length as
        the number of patches in the collection.

Constructor arguments are the same as for
        :class:`~matplotlib.collections.PatchCollection`. In addition,
        keywords *zs=0* and *zdir='z'* are available.

Also, the keyword argument "depthshade" is available to
        indicate whether or not to shade the patches in order to
        give the appearance of depth (default is *True*).
        This is typically desired in scatter plots.
        """
        self._depthshade = depthshade
        super().__init__(*args, **kwargs)
        self.set_3d_properties(zs, zdir)

def set_sort_zpos(self, val):
        """Set the position to use for z-sorting."""
        self._sort_zpos = val
        self.stale = True

def set_3d_properties(self, zs, zdir):
        # Force the collection to initialize the face and edgecolors
        # just in case it is a scalarmappable with a colormap.
        self.update_scalarmappable()
        offsets = self.get_offsets()
        if len(offsets) > 0:
            xs, ys = offsets.T
        else:
            xs = []
            ys = []
        self._offsets3d = juggle_axes(xs, ys, np.atleast_1d(zs), zdir)
        self._facecolor3d = self.get_facecolor()
        self._edgecolor3d = self.get_edgecolor()
        self.stale = True

def do_3d_projection(self, renderer):
        xs, ys, zs = self._offsets3d
        vxs, vys, vzs, vis = proj3d.proj_transform_clip(xs, ys, zs, renderer.M)

fcs = (_zalpha(self._facecolor3d, vzs) if self._depthshade else
               self._facecolor3d)
        fcs = mcolors.to_rgba_array(fcs, self._alpha)
        self.set_facecolors(fcs)

ecs = (_zalpha(self._edgecolor3d, vzs) if self._depthshade else
               self._edgecolor3d)
        ecs = mcolors.to_rgba_array(ecs, self._alpha)
        self.set_edgecolors(ecs)
        PatchCollection.set_offsets(self, np.column_stack([vxs, vys]))

if vzs.size > 0:
            return min(vzs)
        else:
            return np.nan

class Path3DCollection(PathCollection):
    """
    A collection of 3D paths.
    """

def __init__(self, *args, zs=0, zdir='z', depthshade=True, **kwargs):
        """
        Create a collection of flat 3D paths with its normal vector
        pointed in *zdir* direction, and located at *zs* on the *zdir*
        axis. 'zs' can be a scalar or an array-like of the same length as
        the number of paths in the collection.

Constructor arguments are the same as for
        :class:`~matplotlib.collections.PathCollection`. In addition,
        keywords *zs=0* and *zdir='z'* are available.

def set_sort_zpos(self, val):
        """Set the position to use for z-sorting."""
        self._sort_zpos = val
        self.stale = True

def do_3d_projection(self, renderer):
        xs, ys, zs = self._offsets3d
        vxs, vys, vzs, vis = proj3d.proj_transform_clip(xs, ys, zs, renderer.M)

fcs = (_zalpha(self._facecolor3d, vzs) if self._depthshade else
               self._facecolor3d)
        ecs = (_zalpha(self._edgecolor3d, vzs) if self._depthshade else
               self._edgecolor3d)
        sizes = self._sizes3d
        lws = self._linewidth3d

# Sort the points based on z coordinates
        # Performance optimization: Create a sorted index array and reorder
        # points and point properties according to the index array
        z_markers_idx = np.argsort(vzs)[::-1]

# Re-order items
        vzs = vzs[z_markers_idx]
        vxs = vxs[z_markers_idx]
        vys = vys[z_markers_idx]
        if len(fcs) > 1:
            fcs = fcs[z_markers_idx]
        if len(ecs) > 1:
            ecs = ecs[z_markers_idx]
        if len(sizes) > 1:
            sizes = sizes[z_markers_idx]
        if len(lws) > 1:
            lws = lws[z_markers_idx]
        vps = np.column_stack((vxs, vys))

fcs = mcolors.to_rgba_array(fcs, self._alpha)
        ecs = mcolors.to_rgba_array(ecs, self._alpha)

self.set_edgecolors(ecs)
        self.set_facecolors(fcs)
        self.set_sizes(sizes)
        self.set_linewidth(lws)

PathCollection.set_offsets(self, vps)

return np.min(vzs) if vzs.size else np.nan

def patch_collection_2d_to_3d(col, zs=0, zdir='z', depthshade=True):
    """
    Convert a :class:`~matplotlib.collections.PatchCollection` into a
    :class:`Patch3DCollection` object
    (or a :class:`~matplotlib.collections.PathCollection` into a
    :class:`Path3DCollection` object).

Parameters
    ----------
    za
        The location or locations to place the patches in the collection along
        the *zdir* axis. Default: 0.
    zdir
        The axis in which to place the patches. Default: "z".
    depthshade
        Whether to shade the patches to give a sense of depth. Default: *True*.

"""
    if isinstance(col, PathCollection):
        col.__class__ = Path3DCollection
    elif isinstance(col, PatchCollection):
        col.__class__ = Patch3DCollection
    col._depthshade = depthshade
    col.set_3d_properties(zs, zdir)

class Poly3DCollection(PolyCollection):
    """
    A collection of 3D polygons.

.. note::
        **Filling of 3D polygons**

There is no simple definition of the enclosed surface of a 3D polygon
        unless the polygon is planar.

In practice, Matplotlib fills the 2D projection of the polygon. This
        gives a correct filling appearance only for planar polygons. For all
        other polygons, you'll find orientations in which the edges of the
        polygon intersect in the projection. This will lead to an incorrect
        visualization of the 3D area.

If you need filled areas, it is recommended to create them via
        `~mpl_toolkits.mplot3d.axes3d.Axes3D.plot_trisurf`, which creates a
        triangulation and thus generates consistent surfaces.
    """

def __init__(self, verts, *args, zsort='average', **kwargs):
        """
        Parameters
        ----------
        verts : list of array-like Nx3
            Each element describes a polygon as a sequence of ``N_i`` points
            ``(x, y, z)``.
        zsort : {'average', 'min', 'max'}, default: 'average'
            The calculation method for the z-order.
            See `~.Poly3DCollection.set_zsort` for details.
        *args, **kwargs
            All other parameters are forwarded to `.PolyCollection`.

Notes
        -----
        Note that this class does a bit of magic with the _facecolors
        and _edgecolors properties.
        """
        super().__init__(verts, *args, **kwargs)
        self.set_zsort(zsort)
        self._codes3d = None

_zsort_functions = {
        'average': np.average,
        'min': np.min,
        'max': np.max,
    }

def set_zsort(self, zsort):
        """
        Set the calculation method for the z-order.

Parameters
        ----------
        zsort : {'average', 'min', 'max'}
            The function applied on the z-coordinates of the vertices in the
            viewer's coordinate system, to determine the z-order.
        """
        self._zsortfunc = self._zsort_functions[zsort]
        self._sort_zpos = None
        self.stale = True

def get_vector(self, segments3d):
        """Optimize points for projection."""
        if len(segments3d):
            xs, ys, zs = np.row_stack(segments3d).T
        else:  # row_stack can't stack zero arrays.
            xs, ys, zs = [], [], []
        ones = np.ones(len(xs))
        self._vec = np.array([xs, ys, zs, ones])

indices = [0, *np.cumsum([len(segment) for segment in segments3d])]
        self._segslices = [*map(slice, indices[:-1], indices[1:])]

def set_verts(self, verts, closed=True):
        """Set 3D vertices."""
        self.get_vector(verts)
        # 2D verts will be updated at draw time
        PolyCollection.set_verts(self, [], False)
        self._closed = closed

def set_verts_and_codes(self, verts, codes):
        """Set 3D vertices with path codes."""
        # set vertices with closed=False to prevent PolyCollection from
        # setting path codes
        self.set_verts(verts, closed=False)
        # and set our own codes instead.
        self._codes3d = codes

def set_3d_properties(self):
        # Force the collection to initialize the face and edgecolors
        # just in case it is a scalarmappable with a colormap.
        self.update_scalarmappable()
        self._sort_zpos = None
        self.set_zsort('average')
        self._facecolors3d = PolyCollection.get_facecolor(self)
        self._edgecolors3d = PolyCollection.get_edgecolor(self)
        self._alpha3d = PolyCollection.get_alpha(self)
        self.stale = True

def set_sort_zpos(self, val):
        """Set the position to use for z-sorting."""
        self._sort_zpos = val
        self.stale = True

def do_3d_projection(self, renderer):
        """
        Perform the 3D projection for this object.
        """
        # FIXME: This may no longer be needed?
        if self._A is not None:
            self.update_scalarmappable()
            self._facecolors3d = self._facecolors

txs, tys, tzs = proj3d._proj_transform_vec(self._vec, renderer.M)
        xyzlist = [(txs[sl], tys[sl], tzs[sl]) for sl in self._segslices]

# This extra fuss is to re-order face / edge colors
        cface = self._facecolors3d
        cedge = self._edgecolors3d
        if len(cface) != len(xyzlist):
            cface = cface.repeat(len(xyzlist), axis=0)
        if len(cedge) != len(xyzlist):
            if len(cedge) == 0:
                cedge = cface
            else:
                cedge = cedge.repeat(len(xyzlist), axis=0)

# sort by depth (furthest drawn first)
        z_segments_2d = sorted(
            ((self._zsortfunc(zs), np.column_stack([xs, ys]), fc, ec, idx)
             for idx, ((xs, ys, zs), fc, ec)
             in enumerate(zip(xyzlist, cface, cedge))),
            key=lambda x: x[0], reverse=True)

zzs, segments_2d, self._facecolors2d, self._edgecolors2d, idxs = \
            zip(*z_segments_2d)

if self._codes3d is not None:
            codes = [self._codes3d[idx] for idx in idxs]
            PolyCollection.set_verts_and_codes(self, segments_2d, codes)
        else:
            PolyCollection.set_verts(self, segments_2d, self._closed)

if len(self._edgecolors3d) != len(cface):
            self._edgecolors2d = self._edgecolors3d

# Return zorder value
        if self._sort_zpos is not None:
            zvec = np.array([[0], [0], [self._sort_zpos], [1]])
            ztrans = proj3d._proj_transform_vec(zvec, renderer.M)
            return ztrans[2][0]
        elif tzs.size > 0:
            # FIXME: Some results still don't look quite right.
            #        In particular, examine contourf3d_demo2.py
            #        with az = -54 and elev = -45.
            return np.min(tzs)
        else:
            return np.nan

def set_facecolor(self, colors):
        PolyCollection.set_facecolor(self, colors)
        self._facecolors3d = PolyCollection.get_facecolor(self)

def set_edgecolor(self, colors):
        PolyCollection.set_edgecolor(self, colors)
        self._edgecolors3d = PolyCollection.get_edgecolor(self)

def set_alpha(self, alpha):
        # docstring inherited
        artist.Artist.set_alpha(self, alpha)
        try:
            self._facecolors3d = mcolors.to_rgba_array(
                self._facecolors3d, self._alpha)
        except (AttributeError, TypeError, IndexError):
            pass
        try:
            self._edgecolors = mcolors.to_rgba_array(
                    self._edgecolors3d, self._alpha)
        except (AttributeError, TypeError, IndexError):
            pass
        self.stale = True

def get_facecolor(self):
        return self._facecolors2d

def get_edgecolor(self):
        return self._edgecolors2d

def poly_collection_2d_to_3d(col, zs=0, zdir='z'):
    """Convert a PolyCollection to a Poly3DCollection object."""
    segments_3d, codes = _paths_to_3d_segments_with_codes(
            col.get_paths(), zs, zdir)
    col.__class__ = Poly3DCollection
    col.set_verts_and_codes(segments_3d, codes)
    col.set_3d_properties()

def juggle_axes(xs, ys, zs, zdir):
    """
    Reorder coordinates so that 2D xs, ys can be plotted in the plane
    orthogonal to zdir. zdir is normally x, y or z. However, if zdir
    starts with a '-' it is interpreted as a compensation for rotate_axes.
    """
    if zdir == 'x':
        return zs, xs, ys
    elif zdir == 'y':
        return xs, zs, ys
    elif zdir[0] == '-':
        return rotate_axes(xs, ys, zs, zdir)
    else:
        return xs, ys, zs

def rotate_axes(xs, ys, zs, zdir):
    """
    Reorder coordinates so that the axes are rotated with zdir along
    the original z axis. Prepending the axis with a '-' does the
    inverse transform, so zdir can be x, -x, y, -y, z or -z
    """
    if zdir == 'x':
        return ys, zs, xs
    elif zdir == '-x':
        return zs, xs, ys

elif zdir == 'y':
        return zs, xs, ys
    elif zdir == '-y':
        return ys, zs, xs

else:
        return xs, ys, zs

def _get_colors(c, num):
    """Stretch the color argument to provide the required number *num*."""
    return np.broadcast_to(
        mcolors.to_rgba_array(c) if len(c) else [0, 0, 0, 0],
        (num, 4))

def _zalpha(colors, zs):
    """Modify the alphas of the color list according to depth."""
    # FIXME: This only works well if the points for *zs* are well-spaced
    #        in all three dimensions. Otherwise, at certain orientations,
    #        the min and max zs are very close together.
    #        Should really normalize against the viewing depth.
    if len(zs) == 0:
        return np.zeros((0, 4))
    norm = Normalize(min(zs), max(zs))
    sats = 1 - norm(zs) * 0.7
    rgba = np.broadcast_to(mcolors.to_rgba_array(colors), (len(zs), 4))
    return np.column_stack([rgba[:, :3], rgba[:, 3] * sats])