EVOLUTION-MANAGER

Edit File: test_attrs.py

# This file is part of h5py, a Python interface to the HDF5 library.
#
# http://www.h5py.org
#
# Copyright 2008-2013 Andrew Collette and contributors
#
# License:  Standard 3-clause BSD; see "license.txt" for full license terms
#           and contributor agreement.

"""
    Attributes testing module

Covers all operations which access the .attrs property, with the
    exception of data read/write and type conversion.  Those operations
    are tested by module test_attrs_data.
"""

from __future__ import absolute_import

import six

import numpy as np

try:
    from collections.abc import MutableMapping
except ImportError:  # Python < 3.3
    from collections import MutableMapping

from .common import TestCase, ut

import h5py
from h5py import File
from h5py import h5a,  h5t
from h5py import AttributeManager

class BaseAttrs(TestCase):

def setUp(self):
        self.f = File(self.mktemp(), 'w')

def tearDown(self):
        if self.f:
            self.f.close()

class TestAccess(BaseAttrs):

"""
        Feature: Attribute creation/retrieval via special methods
    """

def test_create(self):
        """ Attribute creation by direct assignment """
        self.f.attrs['a'] = 4.0
        self.assertEqual(list(self.f.attrs.keys()), ['a'])
        self.assertEqual(self.f.attrs['a'], 4.0)

def test_overwrite(self):
        """ Attributes are silently overwritten """
        self.f.attrs['a'] = 4.0
        self.f.attrs['a'] = 5.0
        self.assertEqual(self.f.attrs['a'], 5.0)

def test_rank(self):
        """ Attribute rank is preserved """
        self.f.attrs['a'] = (4.0, 5.0)
        self.assertEqual(self.f.attrs['a'].shape, (2,))
        self.assertArrayEqual(self.f.attrs['a'], np.array((4.0,5.0)))

def test_single(self):
        """ Attributes of shape (1,) don't become scalars """
        self.f.attrs['a'] = np.ones((1,))
        out = self.f.attrs['a']
        self.assertEqual(out.shape, (1,))
        self.assertEqual(out[()], 1)

def test_access_exc(self):
        """ Attempt to access missing item raises KeyError """
        with self.assertRaises(KeyError):
            self.f.attrs['a']

def test_get_id(self):
        self.f.attrs['a'] = 4.0
        aid = self.f.attrs.get_id('a')
        assert isinstance(aid, h5a.AttrID)

with self.assertRaises(KeyError):
            self.f.attrs.get_id('b')

class TestDelete(BaseAttrs):

"""
        Feature: Deletion of attributes using __delitem__
    """

def test_delete(self):
        """ Deletion via "del" """
        self.f.attrs['a'] = 4.0
        self.assertIn('a', self.f.attrs)
        del self.f.attrs['a']
        self.assertNotIn('a', self.f.attrs)

def test_delete_exc(self):
        """ Attempt to delete missing item raises KeyError """
        with self.assertRaises(KeyError):
            del self.f.attrs['a']

class TestUnicode(BaseAttrs):

"""
        Feature: Attributes can be accessed via Unicode or byte strings
    """

def test_ascii(self):
        """ Access via pure-ASCII byte string """
        self.f.attrs[b"ascii"] = 42
        out = self.f.attrs[b"ascii"]
        self.assertEqual(out, 42)

def test_raw(self):
        """ Access via non-ASCII byte string """
        name = b"non-ascii\xfe"
        self.f.attrs[name] = 42
        out = self.f.attrs[name]
        self.assertEqual(out, 42)

def test_unicode(self):
        """ Access via Unicode string with non-ascii characters """
        name = u"Omega" + six.unichr(0x03A9)
        self.f.attrs[name] = 42
        out = self.f.attrs[name]
        self.assertEqual(out, 42)

class TestCreate(BaseAttrs):

"""
        Options for explicit attribute creation
    """

def test_named(self):
        """ Attributes created from named types link to the source type object
        """
        self.f['type'] = np.dtype('u8')
        self.f.attrs.create('x', 42, dtype=self.f['type'])
        self.assertEqual(self.f.attrs['x'], 42)
        aid = h5a.open(self.f.id, b'x')
        htype = aid.get_type()
        htype2 = self.f['type'].id
        self.assertEqual(htype, htype2)
        self.assertTrue(htype.committed())

class TestMutableMapping(BaseAttrs):
    '''Tests if the registration of AttributeManager as a MutableMapping
    behaves as expected
    '''
    def test_resolution(self):
        assert issubclass(AttributeManager, MutableMapping)
        assert isinstance(self.f.attrs, MutableMapping)

def test_validity(self):
        '''
        Test that the required functions are implemented.
        '''
        AttributeManager.__getitem__
        AttributeManager.__setitem__
        AttributeManager.__delitem__
        AttributeManager.__iter__
        AttributeManager.__len__

class TestVlen(BaseAttrs):
    def test_vlen(self):
        a = np.array([np.arange(3), np.arange(4)],
            dtype=h5t.vlen_dtype(int))
        self.f.attrs['a'] = a
        self.assertArrayEqual(self.f.attrs['a'][0], a[0])

class TestTrackOrder(BaseAttrs):
    def fill_attrs(self, track_order):
        attrs = self.f.create_group('test', track_order=track_order).attrs
        for i in range(100):
            attrs[str(i)] = i
        return attrs

@ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 10, 6), 'HDF5 1.10.6 required')
    # https://forum.hdfgroup.org/t/bug-h5arename-fails-unexpectedly/4881
    def test_track_order(self):
        attrs = self.fill_attrs(track_order=True)  # creation order
        self.assertEqual(list(attrs),
                         [u'' + str(i) for i in range(100)])

def test_no_track_order(self):
        attrs = self.fill_attrs(track_order=False)  # name alphanumeric
        self.assertEqual(list(attrs),
                         sorted([u'' + str(i) for i in range(100)]))