EVOLUTION-MANAGER
Edit File: summary.scanoneboot.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Bootstrap confidence interval for QTL location</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for summary.scanoneboot {qtl}"><tr><td>summary.scanoneboot {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Bootstrap confidence interval for QTL location</h2> <h3>Description</h3> <p>Calculates a bootstrap confidence interval for QTL location, using the bootstrap results from <code><a href="scanoneboot.html">scanoneboot</a></code>. </p> <h3>Usage</h3> <pre> ## S3 method for class 'scanoneboot' summary(object, prob=0.95, expandtomarkers=FALSE, ...) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>object</code></td> <td> <p>Output from <code><a href="scanoneboot.html">scanoneboot</a></code>.</p> </td></tr> <tr valign="top"><td><code>prob</code></td> <td> <p>Desired coverage.</p> </td></tr> <tr valign="top"><td><code>expandtomarkers</code></td> <td> <p>If TRUE, the interval is expanded to the nearest flanking markers.</p> </td></tr> <tr valign="top"><td><code>...</code></td> <td> <p>Ignored at this point.</p> </td></tr> </table> <h3>Value</h3> <p>An object of class <code>scanone</code>, indicating the position with the maximum LOD, and indicating endpoints for the estimated bootstrap confidence interval. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="scanoneboot.html">scanoneboot</a></code>, <code><a href="plot.scanoneboot.html">plot.scanoneboot</a></code>, <code><a href="lodint.html">lodint</a></code>, <code><a href="bayesint.html">bayesint</a></code> </p> <h3>Examples</h3> <pre> ## Not run: data(fake.f2) fake.f2 <- calc.genoprob(fake.f2, step=1, err=0.001) bootoutput <- scanoneboot(fake.f2, chr=13, method="hk") summary(bootoutput) ## End(Not run) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.46-2 <a href="00Index.html">Index</a>]</div> </body></html>