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Edit File: summary.comparegeno.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Print pairs of individuals with similar genotype data.</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for summary.comparegeno {qtl}"><tr><td>summary.comparegeno {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Print pairs of individuals with similar genotype data.</h2> <h3>Description</h3> <p>Prints a summary the output from <code><a href="comparegeno.html">comparegeno</a></code> that includes pairs of individuals whose proportion of matching genotypes is above a chosen threshold. </p> <h3>Usage</h3> <pre> ## S3 method for class 'comparegeno' summary(object, thresh=0.9, ...) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>object</code></td> <td> <p>An object of class <code>comparegeno</code>, the output of the function <code><a href="comparegeno.html">comparegeno</a></code>.</p> </td></tr> <tr valign="top"><td><code>thresh</code></td> <td> <p>Threshold on the proportion of matching genotypes.</p> </td></tr> <tr valign="top"><td><code>...</code></td> <td> <p>Ignored at this point.</p> </td></tr> </table> <h3>Value</h3> <p>A data frame with each row being a pair of individuals and columns including the individual identifiers (via <code>getid</code>, or just as numeric indexes) along with the proportion of matching genotypes. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="comparegeno.html">comparegeno</a></code>, <code><a href="plot.comparegeno.html">plot.comparegeno</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) cg <- comparegeno(fake.f2) summary(cg, 0.7) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.46-2 <a href="00Index.html">Index</a>]</div> </body></html>