EVOLUTION-MANAGER
Edit File: strip.partials.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Strip partially informative genotypes</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for strip.partials {qtl}"><tr><td>strip.partials {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Strip partially informative genotypes</h2> <h3>Description</h3> <p>Replace all partially informative genotypes (e.g., dominant markers in an intercross) with missing values. </p> <h3>Usage</h3> <pre>strip.partials(cross, verbose=TRUE)</pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>cross</code></td> <td> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details.</p> </td></tr> <tr valign="top"><td><code>verbose</code></td> <td> <p>If TRUE, print the number of genotypes removed.</p> </td></tr> </table> <h3>Value</h3> <p>The same class <code>cross</code> object as in the input, but with partially informative genotypes made missing. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="plot.missing.html">plotMissing</a></code>, <code><a href="plot.info.html">plotInfo</a></code> </p> <h3>Examples</h3> <pre> data(listeria) sum(nmissing(listeria)) listeria <- strip.partials(listeria) sum(nmissing(listeria)) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>