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Edit File: plot.comparegeno.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Plot genotype comparison</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for plot.comparegeno {qtl}"><tr><td>plot.comparegeno {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Plot genotype comparison</h2> <h3>Description</h3> <p>Plot the results of the comparison of all pairs of individuals' genotypes. A histogram of the proportion of matching genotypes, with tick marks at individual values below, via <code><a href="../../graphics/html/rug.html">rug</a></code>. </p> <h3>Usage</h3> <pre> ## S3 method for class 'comparegeno' plot(x, breaks=NULL, main="", xlab="Proportion matching genotypes", ...) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>x</code></td> <td> <p>An object of class <code>"comparegeno"</code>, as produced by <code><a href="comparegeno.html">comparegeno</a></code>.</p> </td></tr> <tr valign="top"><td><code>breaks</code></td> <td> <p>Passed to <code><a href="../../graphics/html/hist.html">hist</a></code>, with the default <i>2 √{n}</i> where <i>n</i> is the number of pairs of individuals.</p> </td></tr> <tr valign="top"><td><code>main</code></td> <td> <p>Title for the plot.</p> </td></tr> <tr valign="top"><td><code>xlab</code></td> <td> <p>x-axis label for the plot.</p> </td></tr> <tr valign="top"><td><code>...</code></td> <td> <p>Passed to <code><a href="../../graphics/html/hist.html">hist</a></code>.</p> </td></tr> </table> <h3>Details</h3> <p>Creates a histogram with <code><a href="../../graphics/html/hist.html">hist</a></code> with ticks at individual values using <code><a href="../../graphics/html/rug.html">rug</a></code>. </p> <h3>Value</h3> <p>None.</p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="comparegeno.html">comparegeno</a></code>, <code><a href="summary.comparegeno.html">summary.comparegeno</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) cg <- comparegeno(fake.f2) plot(cg) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.46-2 <a href="00Index.html">Index</a>]</div> </body></html>