EVOLUTION-MANAGER
Edit File: movemarker.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Move a marker to a new chromosome</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for movemarker {qtl}"><tr><td>movemarker {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Move a marker to a new chromosome</h2> <h3>Description</h3> <p>Move a specified marker to a different chromosome. </p> <h3>Usage</h3> <pre>movemarker(cross, marker, newchr, newpos)</pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>cross</code></td> <td> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details.</p> </td></tr> <tr valign="top"><td><code>marker</code></td> <td> <p>The name of the marker to be moved (a character string).</p> </td></tr> <tr valign="top"><td><code>newchr</code></td> <td> <p>The chromosome to which the marker should be moved.</p> </td></tr> <tr valign="top"><td><code>newpos</code></td> <td> <p>The position (in cM) at which the marker should be placed. If missing, the marker is placed at the end of the chromosome.</p> </td></tr> </table> <h3>Value</h3> <p>The input <code>cross</code> object, but with the specified marker moved to the specified chromosome. </p> <p>All intermediate calculations (such as the results of <code><a href="calc.genoprob.html">calc.genoprob</a></code> and <code><a href="est.rf.html">est.rf</a></code>) are removed. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="switch.order.html">switch.order</a></code> </p> <h3>Examples</h3> <pre> data(badorder) badorder <- movemarker(badorder, "D2M937", 3, 48.15) badorder <- movemarker(badorder, "D3M160", 2, 28.83) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>