EVOLUTION-MANAGER
Edit File: mapthis.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Simulated data for illustrating genetic map construction</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for mapthis {qtl}"><tr><td>mapthis {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Simulated data for illustrating genetic map construction</h2> <h3>Description</h3> <p>Simulated data for an F2 intercross, obtained using <code><a href="sim.cross.html">sim.cross</a></code>, useful for illustrating the process of constructing a genetic map. </p> <h3>Usage</h3> <pre>data(mapthis)</pre> <h3>Format</h3> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details. </p> <h3>Details</h3> <p> These are simulated data, consisting of 300 F2 individuals typed at 100 markers on five chromosomes. There are no real phenotypes, just a set of individual identifiers. The data were simulated for the purpose of illustrating the process of constructing a genetic map. The markers are all assigned to a single chromosome and in a random order, and there are a number of problematic markers and individuals. </p> <p>See <a href="https://rqtl.org/tutorials/geneticmaps.pdf">https://rqtl.org/tutorials/geneticmaps.pdf</a> for a tutorial on how to construct a genetic map with these data.</p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>References</h3> <p>Broman, K. W. (2010) Genetic map construction with R/qtl. Technical report #214, Department of Biostatistics and Medical Informatics, University of Wisconsin–Madison </p> <h3>See Also</h3> <p><code><a href="fake.f2.html">fake.f2</a></code>, <code><a href="est.rf.html">est.rf</a></code>, <code><a href="est.map.html">est.map</a></code>, <code><a href="formLinkageGroups.html">formLinkageGroups</a></code>, <code><a href="orderMarkers.html">orderMarkers</a></code> </p> <h3>Examples</h3> <pre> data(mapthis) summary(mapthis) plot(mapthis) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>