EVOLUTION-MANAGER
Edit File: cbind.scanoneperm.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Combine columns from multiple scanone permutation results</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for cbind.scanoneperm {qtl}"><tr><td>cbind.scanoneperm {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Combine columns from multiple scanone permutation results</h2> <h3>Description</h3> <p>Concatenate the columns from different runs of <code><a href="scanone.html">scanone</a></code> with <code>n.perm > 0</code>. </p> <h3>Usage</h3> <pre> ## S3 method for class 'scanoneperm' cbind(..., labels) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>...</code></td> <td> <p>A set of objects of class <code>scanoneperm</code>. These are the permutation results from <code><a href="scanone.html">scanone</a></code> (that is, when <code>n.perm > 0</code>), generally run with different phenotypes or methods.</p> </td></tr> <tr valign="top"><td><code>labels</code></td> <td> <p>A vector of character strings, of length 1 or of the same length as the input <code>...</code>, to be appended to the column names in the output.</p> </td></tr> </table> <h3>Details</h3> <p>The aim of this function is to concatenate the results from multiple runs of a permutation test <code><a href="scanone.html">scanone</a></code>, generally for different phenotypes and/or methods, to be used in parallel with <code><a href="c.scanone.html">c.scanone</a></code>. </p> <h3>Value</h3> <p>The concatenated input, as a <code>scanoneperm</code> object. If different numbers of permutation replicates were used, those columns with fewer replicates are padded with missing values (<code>NA</code>).</p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="summary.scanoneperm.html">summary.scanoneperm</a></code>, <code><a href="scanone.html">scanone</a></code>, <code><a href="c.scanoneperm.html">c.scanoneperm</a></code>, <code><a href="c.scanone.html">c.scanone</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) fake.f2 <- calc.genoprob(fake.f2) operm1 <- scanone(fake.f2, method="hk", n.perm=10, perm.Xsp=TRUE) operm2 <- scanone(fake.f2, method="em", n.perm=5, perm.Xsp=TRUE) operm <- cbind(operm1, operm2, labels=c("hk","em")) summary(operm) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>