EVOLUTION-MANAGER

Edit File: GNUmakefile

## -*- mode: make; tab-width: 8; -*- ## ## Simple Makefile for MPI use of RInside ## ## TODO: ## proper configure for non-Debian file locations, [ Done ] ## allow RHOME to be set for non-default R etc [ Done ] ## comment this out if you need a different version of R, ## and set set R_HOME accordingly as an environment variable R_HOME := $(shell R RHOME) sources := $(wildcard *.cpp) programs := $(sources:.cpp=) # OpenMPI header and libraries MPICPPFLAGS := $(shell mpic++ -showme:compile) MPILIBS := $(shell mpic++ -showme:link) ## include headers and libraries for R RCPPFLAGS := $(shell $(R_HOME)/bin/R CMD config --cppflags) RLDFLAGS := $(shell $(R_HOME)/bin/R CMD config --ldflags) RBLAS := $(shell $(R_HOME)/bin/R CMD config BLAS_LIBS) RLAPACK := $(shell $(R_HOME)/bin/R CMD config LAPACK_LIBS) ## include headers and libraries for Rcpp interface classes ## note that RCPPLIBS will be empty with Rcpp (>= 0.11.0) and can be omitted RCPPINCL := $(shell echo 'Rcpp:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave) RCPPLIBS := $(shell echo 'Rcpp:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave) ## include headers and libraries for RInside embedding classes RINSIDEINCL := $(shell echo 'RInside:::CxxFlags()' | $(R_HOME)/bin/R --vanilla --slave) RINSIDELIBS := $(shell echo 'RInside:::LdFlags()' | $(R_HOME)/bin/R --vanilla --slave) ## compiler etc settings used in default make rules CXX := $(shell $(R_HOME)/bin/R CMD config CXX) CPPFLAGS := -Wall $(shell $(R_HOME)/bin/R CMD config CPPFLAGS) CXXFLAGS := $(MPICPPFLAGS) $(RCPPFLAGS) $(RCPPINCL) $(RINSIDEINCL) $(shell $(R_HOME)/bin/R CMD config CXXFLAGS) LDLIBS := $(MPILIBS) $(RLDFLAGS) $(RBLAS) $(RLAPACK) $(RCPPLIBS) $(RINSIDELIBS) all : $(programs) @test -x /usr/bin/strip && strip $^ run : $(programs) @test -x /usr/bin/mpirun && for p in $(programs); do echo; echo "Running $$p:"; mpirun -n 4 ./$$p; done clean: rm -vf $(programs)