EVOLUTION-MANAGER

Edit File: graphml.hpp

// Copyright (C) 2006  Tiago de Paula Peixoto <tiago@forked.de>
// Copyright (C) 2004  The Trustees of Indiana University.
//
// Use, modification and distribution is subject to the Boost Software
// License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
//
//  Authors: Douglas Gregor
//           Andrew Lumsdaine
//           Tiago de Paula Peixoto

#ifndef BOOST_GRAPH_GRAPHML_HPP
#define BOOST_GRAPH_GRAPHML_HPP

#include <boost/config.hpp>
#include <boost/lexical_cast.hpp>
#include <boost/any.hpp>
#include <boost/type_traits/is_convertible.hpp>
#include <boost/graph/dll_import_export.hpp>
#include <boost/graph/graphviz.hpp> // for exceptions
#include <typeinfo>
#include <boost/mpl/bool.hpp>
#include <boost/mpl/vector.hpp>
#include <boost/mpl/find.hpp>
#include <boost/mpl/for_each.hpp>
#include <boost/property_tree/detail/xml_parser_utils.hpp>
#include <boost/throw_exception.hpp>
#include <exception>
#include <sstream>

namespace boost
{

/////////////////////////////////////////////////////////////////////////////
// Graph reader exceptions
/////////////////////////////////////////////////////////////////////////////
struct BOOST_SYMBOL_VISIBLE parse_error: public graph_exception
{
    parse_error(const std::string& err) {error = err; statement = "parse error: " + error;}
    virtual ~parse_error() throw() {}
    virtual const char* what() const throw() {return statement.c_str();}
    std::string statement;
    std::string error;
};

class mutate_graph
{
public:
    virtual ~mutate_graph() {}
    virtual bool is_directed() const = 0;

virtual boost::any do_add_vertex() = 0;
    virtual std::pair<boost::any,bool> do_add_edge(boost::any source, boost::any target) = 0;

virtual void
    set_graph_property(const std::string& name, const std::string& value, const std::string& value_type) = 0;

virtual void
    set_vertex_property(const std::string& name, boost::any vertex, const std::string& value, const std::string& value_type) = 0;

virtual void
    set_edge_property(const std::string& name, boost::any edge, const std::string& value, const std::string& value_type) = 0;
};

template<typename MutableGraph>
class mutate_graph_impl : public mutate_graph
{
    typedef typename graph_traits<MutableGraph>::vertex_descriptor vertex_descriptor;
    typedef typename graph_traits<MutableGraph>::edge_descriptor edge_descriptor;

public:
    mutate_graph_impl(MutableGraph& g, dynamic_properties& dp)
        : m_g(g), m_dp(dp) { }

bool is_directed() const
    {
        return is_convertible<typename graph_traits<MutableGraph>::directed_category,
                              directed_tag>::value;
    }

virtual any do_add_vertex()
    {
        return any(add_vertex(m_g));
    }

virtual std::pair<any,bool> do_add_edge(any source, any target)
    {
        std::pair<edge_descriptor,bool> retval = add_edge(any_cast<vertex_descriptor>(source),
                                                          any_cast<vertex_descriptor>(target), m_g);
        return std::make_pair(any(retval.first), retval.second);
    }

virtual void
    set_graph_property(const std::string& name, const std::string& value, const std::string& value_type)
    {
        bool type_found = false;
        try
        {
            mpl::for_each<value_types>(put_property<MutableGraph *,value_types>
                                       (name, m_dp, &m_g, value, value_type, m_type_names, type_found));
        }
        catch (const bad_lexical_cast&)
        {
            BOOST_THROW_EXCEPTION(
              parse_error("invalid value \"" + value + "\" for key " +
                          name + " of type " + value_type));
        }
        if (!type_found)
        {
            BOOST_THROW_EXCEPTION(
              parse_error("unrecognized type \"" + value_type +
                          "\" for key " + name));
        }

}

virtual void
    set_vertex_property(const std::string& name, any vertex, const std::string& value, const std::string& value_type)
    {
        bool type_found = false;
        try
        {
            mpl::for_each<value_types>(put_property<vertex_descriptor,value_types>
                                       (name, m_dp, any_cast<vertex_descriptor>(vertex),
                                        value, value_type, m_type_names, type_found));
        }
        catch (const bad_lexical_cast&)
        {
            BOOST_THROW_EXCEPTION(
              parse_error("invalid value \"" + value + "\" for key " +
                          name + " of type " + value_type));
        }
        if (!type_found)
        {
            BOOST_THROW_EXCEPTION(
              parse_error("unrecognized type \"" + value_type +
                          "\" for key " + name));
        }

}

virtual void
    set_edge_property(const std::string& name, any edge, const std::string& value, const std::string& value_type)
    {
        bool type_found = false;
        try
        {
            mpl::for_each<value_types>(put_property<edge_descriptor,value_types>
                                       (name, m_dp, any_cast<edge_descriptor>(edge),
                                        value, value_type, m_type_names, type_found));
        }
        catch (const bad_lexical_cast&)
        {
            BOOST_THROW_EXCEPTION(
              parse_error("invalid value \"" + value + "\" for key " +
                          name + " of type " + value_type));
        }
        if (!type_found)
        {
            BOOST_THROW_EXCEPTION(
              parse_error("unrecognized type \"" + value_type +
                          "\" for key " + name));
        }
    }

template <typename Key, typename ValueVector>
    class put_property
    {
    public:
        put_property(const std::string& name, dynamic_properties& dp, const Key& key,
                     const std::string& value, const std::string& value_type,
                     const char** type_names, bool& type_found)
            : m_name(name), m_dp(dp), m_key(key), m_value(value),
              m_value_type(value_type), m_type_names(type_names),
              m_type_found(type_found) {}
        template <class Value>
        void operator()(Value)
        {
            if (m_value_type == m_type_names[mpl::find<ValueVector,Value>::type::pos::value])
            {
                put(m_name, m_dp, m_key, lexical_cast<Value>(m_value));
                m_type_found = true;
            }
        }
    private:
        const std::string& m_name;
        dynamic_properties& m_dp;
        const Key& m_key;
        const std::string& m_value;
        const std::string& m_value_type;
        const char** m_type_names;
        bool& m_type_found;
    };

protected:
    MutableGraph& m_g;
    dynamic_properties& m_dp;
    typedef mpl::vector<bool, int, long, float, double, std::string> value_types;
    static const char* m_type_names[];
};

template<typename MutableGraph>
const char* mutate_graph_impl<MutableGraph>::m_type_names[] = {"boolean", "int", "long", "float", "double", "string"};

void BOOST_GRAPH_DECL
read_graphml(std::istream& in, mutate_graph& g, size_t desired_idx);

template<typename MutableGraph>
void
read_graphml(std::istream& in, MutableGraph& g, dynamic_properties& dp, size_t desired_idx = 0)
{
    mutate_graph_impl<MutableGraph> mg(g,dp);
    read_graphml(in, mg, desired_idx);
}

template <typename Types>
class get_type_name
{
public:
    get_type_name(const std::type_info& type, const char** type_names, std::string& type_name)
        : m_type(type), m_type_names(type_names), m_type_name(type_name) {}
    template <typename Type>
    void operator()(Type)
    {
        if (typeid(Type) == m_type)
            m_type_name = m_type_names[mpl::find<Types,Type>::type::pos::value];
    }
private:
    const std::type_info &m_type;
    const char** m_type_names;
    std::string &m_type_name;
};

template <typename Graph, typename VertexIndexMap>
void
write_graphml(std::ostream& out, const Graph& g, VertexIndexMap vertex_index,
              const dynamic_properties& dp, bool ordered_vertices=false)
{
    typedef typename graph_traits<Graph>::directed_category directed_category;
    typedef typename graph_traits<Graph>::edge_descriptor edge_descriptor;
    typedef typename graph_traits<Graph>::vertex_descriptor vertex_descriptor;

using boost::property_tree::xml_parser::encode_char_entities;

BOOST_STATIC_CONSTANT(bool,
                          graph_is_directed =
                          (is_convertible<directed_category*, directed_tag*>::value));

out << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
        << "<graphml xmlns=\"http://graphml.graphdrawing.org/xmlns\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd\">\n";

typedef mpl::vector<bool, short, unsigned short, int, unsigned int, long, unsigned long, long long, unsigned long long, float, double, long double, std::string> value_types;
    const char* type_names[] = {"boolean", "int", "int", "int", "int", "long", "long", "long", "long", "float", "double", "double", "string"};
    std::map<std::string, std::string> graph_key_ids;
    std::map<std::string, std::string> vertex_key_ids;
    std::map<std::string, std::string> edge_key_ids;
    int key_count = 0;

// Output keys
    for (dynamic_properties::const_iterator i = dp.begin(); i != dp.end(); ++i)
    {
        std::string key_id = "key" + lexical_cast<std::string>(key_count++);
        if (i->second->key() == typeid(Graph*))
            graph_key_ids[i->first] = key_id;
        else if (i->second->key() == typeid(vertex_descriptor))
            vertex_key_ids[i->first] = key_id;
        else if (i->second->key() == typeid(edge_descriptor))
            edge_key_ids[i->first] = key_id;
        else
            continue;
        std::string type_name = "string";
        mpl::for_each<value_types>(get_type_name<value_types>(i->second->value(), type_names, type_name));
        out << "  <key id=\"" << encode_char_entities(key_id) << "\" for=\""
            << (i->second->key() == typeid(Graph*) ? "graph" : (i->second->key() == typeid(vertex_descriptor) ? "node" : "edge")) << "\""
            << " attr.name=\"" << i->first << "\""
            << " attr.type=\"" << type_name << "\""
            << " />\n";
    }

out << "  <graph id=\"G\" edgedefault=\""
        << (graph_is_directed ? "directed" : "undirected") << "\""
        << " parse.nodeids=\"" << (ordered_vertices ? "canonical" : "free") << "\""
        << " parse.edgeids=\"canonical\" parse.order=\"nodesfirst\">\n";

// Output graph data
    for (dynamic_properties::const_iterator i = dp.begin(); i != dp.end(); ++i)
    {
        if (i->second->key() == typeid(Graph*))
        {
            // The const_cast here is just to get typeid correct for property
            // map key; the graph should not be mutated using it.
            out << "   <data key=\"" << graph_key_ids[i->first] << "\">"
                << encode_char_entities(i->second->get_string(const_cast<Graph*>(&g))) << "</data>\n";
        }
    }

typedef typename graph_traits<Graph>::vertex_iterator vertex_iterator;
    vertex_iterator v, v_end;
    for (boost::tie(v, v_end) = vertices(g); v != v_end; ++v)
    {
        out << "    <node id=\"n" << get(vertex_index, *v) << "\">\n";
        // Output data
        for (dynamic_properties::const_iterator i = dp.begin(); i != dp.end(); ++i)
        {
            if (i->second->key() == typeid(vertex_descriptor))
            {
                out << "      <data key=\"" << vertex_key_ids[i->first] << "\">"
                    << encode_char_entities(i->second->get_string(*v)) << "</data>\n";
            }
        }
        out << "    </node>\n";
    }

typedef typename graph_traits<Graph>::edge_iterator edge_iterator;
    edge_iterator e, e_end;
    typename graph_traits<Graph>::edges_size_type edge_count = 0;
    for (boost::tie(e, e_end) = edges(g); e != e_end; ++e)
    {
        out << "    <edge id=\"e" << edge_count++ << "\" source=\"n"
            << get(vertex_index, source(*e, g)) << "\" target=\"n"
            << get(vertex_index, target(*e, g)) << "\">\n";

// Output data
        for (dynamic_properties::const_iterator i = dp.begin(); i != dp.end(); ++i)
        {
            if (i->second->key() == typeid(edge_descriptor))
            {
                out << "      <data key=\"" << edge_key_ids[i->first] << "\">"
                    << encode_char_entities(i->second->get_string(*e)) << "</data>\n";
            }
        }
        out << "    </edge>\n";
    }

out << "  </graph>\n"
        << "</graphml>\n";
}

template <typename Graph>
void
write_graphml(std::ostream& out, const Graph& g, const dynamic_properties& dp,
              bool ordered_vertices=false)
{
    write_graphml(out, g, get(vertex_index, g), dp, ordered_vertices);
}

} // boost namespace

#endif // BOOST_GRAPH_GRAPHML_HPP