EVOLUTION-MANAGER

Edit File: alter_code1.py

""" This module converts code written for Numeric to run with numpy Makes the following changes: * Changes import statements (warns of use of from Numeric import *) * Changes import statements (using numerix) ... * Makes search and replace changes to: - .typecode() - .iscontiguous() - .byteswapped() - .itemsize() - .toscalar() * Converts .flat to .ravel() except for .flat = xxx or .flat[xxx] * Replace xxx.spacesaver() with True * Convert xx.savespace(?) to pass + ## xx.savespace(?) * Converts uses of 'b' to 'B' in the typecode-position of functions: eye, tri (in position 4) ones, zeros, identity, empty, array, asarray, arange, fromstring, indices, array_constructor (in position 2) and methods: astype --- only argument -- converts uses of '1', 's', 'w', and 'u' to -- 'b', 'h', 'H', and 'I' * Converts uses of type(...) is <type> isinstance(..., <type>) """ __all__ = ['convertfile', 'convertall', 'converttree', 'convertsrc'] import sys import os import re import glob _func4 = ['eye', 'tri'] _meth1 = ['astype'] _func2 = ['ones', 'zeros', 'identity', 'fromstring', 'indices', 'empty', 'array', 'asarray', 'arange', 'array_constructor'] _chars = {'1':'b','s':'h','w':'H','u':'I'} func_re = {} meth_re = {} for name in _func2: _astr = r"""(%s\s*[(][^,]*?[,][^'"]*?['"])b(['"][^)]*?[)])"""%name func_re[name] = re.compile(_astr, re.DOTALL) for name in _func4: _astr = r"""(%s\s*[(][^,]*?[,][^,]*?[,][^,]*?[,][^'"]*?['"])b(['"][^)]*?[)])"""%name func_re[name] = re.compile(_astr, re.DOTALL) for name in _meth1: _astr = r"""(.%s\s*[(][^'"]*?['"])b(['"][^)]*?[)])"""%name func_re[name] = re.compile(_astr, re.DOTALL) for char in _chars.keys(): _astr = r"""(.astype\s*[(][^'"]*?['"])%s(['"][^)]*?[)])"""%char meth_re[char] = re.compile(_astr, re.DOTALL) def fixtypechars(fstr): for name in _func2 + _func4 + _meth1: fstr = func_re[name].sub('\\1B\\2',fstr) for char in _chars.keys(): fstr = meth_re[char].sub('\\1%s\\2'%_chars[char], fstr) return fstr flatindex_re = re.compile('([.]flat(\s*?[[=]))') def changeimports(fstr, name, newname): importstr = 'import %s' % name importasstr = 'import %s as ' % name fromstr = 'from %s import ' % name fromall=0 fstr = re.sub(r'(import\s+[^,\n\r]+,\s*)(%s)' % name, "\\1%s as %s" % (newname, name), fstr) fstr = fstr.replace(importasstr, 'import %s as ' % newname) fstr = fstr.replace(importstr, 'import %s as %s' % (newname,name)) ind = 0 Nlen = len(fromstr) Nlen2 = len("from %s import " % newname) while 1: found = fstr.find(fromstr,ind) if (found < 0): break ind = found + Nlen if fstr[ind] == '*': continue fstr = "%sfrom %s import %s" % (fstr[:found], newname, fstr[ind:]) ind += Nlen2 - Nlen return fstr, fromall istest_re = {} _types = ['float', 'int', 'complex', 'ArrayType', 'FloatType', 'IntType', 'ComplexType'] for name in _types: _astr = r'type\s*[(]([^)]*)[)]\s+(?:is|==)\s+(.*?%s)'%name istest_re[name] = re.compile(_astr) def fixistesting(astr): for name in _types: astr = istest_re[name].sub('isinstance(\\1, \\2)', astr) return astr def replaceattr(astr): astr = astr.replace(".typecode()",".dtype.char") astr = astr.replace(".iscontiguous()",".flags.contiguous") astr = astr.replace(".byteswapped()",".byteswap()") astr = astr.replace(".toscalar()", ".item()") astr = astr.replace(".itemsize()",".itemsize") # preserve uses of flat that should be o.k. tmpstr = flatindex_re.sub(r"@@@@\2",astr) # replace other uses of flat tmpstr = tmpstr.replace(".flat",".ravel()") # put back .flat where it was valid astr = tmpstr.replace("@@@@", ".flat") return astr svspc2 = re.compile(r'([^,(\s]+[.]spacesaver[(][)])') svspc3 = re.compile(r'(\S+[.]savespace[(].*[)])') #shpe = re.compile(r'(\S+\s*)[.]shape\s*=[^=]\s*(.+)') def replaceother(astr): astr = svspc2.sub('True',astr) astr = svspc3.sub(r'pass ## \1', astr) #astr = shpe.sub('\\1=\\1.reshape(\\2)', astr) return astr import datetime def fromstr(filestr): savestr = filestr[:] filestr = fixtypechars(filestr) filestr = fixistesting(filestr) filestr, fromall1 = changeimports(filestr, 'Numeric', 'numpy.oldnumeric') filestr, fromall1 = changeimports(filestr, 'multiarray','numpy.oldnumeric') filestr, fromall1 = changeimports(filestr, 'umath', 'numpy.oldnumeric') filestr, fromall1 = changeimports(filestr, 'Precision', 'numpy.oldnumeric.precision') filestr, fromall1 = changeimports(filestr, 'UserArray', 'numpy.oldnumeric.user_array') filestr, fromall1 = changeimports(filestr, 'ArrayPrinter', 'numpy.oldnumeric.array_printer') filestr, fromall2 = changeimports(filestr, 'numerix', 'numpy.oldnumeric') filestr, fromall3 = changeimports(filestr, 'scipy_base', 'numpy.oldnumeric') filestr, fromall3 = changeimports(filestr, 'Matrix', 'numpy.oldnumeric.matrix') filestr, fromall3 = changeimports(filestr, 'MLab', 'numpy.oldnumeric.mlab') filestr, fromall3 = changeimports(filestr, 'LinearAlgebra', 'numpy.oldnumeric.linear_algebra') filestr, fromall3 = changeimports(filestr, 'RNG', 'numpy.oldnumeric.rng') filestr, fromall3 = changeimports(filestr, 'RNG.Statistics', 'numpy.oldnumeric.rng_stats') filestr, fromall3 = changeimports(filestr, 'RandomArray', 'numpy.oldnumeric.random_array') filestr, fromall3 = changeimports(filestr, 'FFT', 'numpy.oldnumeric.fft') filestr, fromall3 = changeimports(filestr, 'MA', 'numpy.oldnumeric.ma') fromall = fromall1 or fromall2 or fromall3 filestr = replaceattr(filestr) filestr = replaceother(filestr) if savestr != filestr: today = datetime.date.today().strftime('%b %d, %Y') name = os.path.split(sys.argv[0])[-1] filestr = '## Automatically adapted for '\ 'numpy.oldnumeric %s by %s\n\n%s' % (today, name, filestr) return filestr, 1 return filestr, 0 def makenewfile(name, filestr): fid = file(name, 'w') fid.write(filestr) fid.close() def convertfile(filename, orig=1): """Convert the filename given from using Numeric to using NumPy Copies the file to filename.orig and then over-writes the file with the updated code """ fid = open(filename) filestr = fid.read() fid.close() filestr, changed = fromstr(filestr) if changed: if orig: base, ext = os.path.splitext(filename) os.rename(filename, base+".orig") else: os.remove(filename) makenewfile(filename, filestr) def fromargs(args): filename = args[1] converttree(filename) def convertall(direc=os.path.curdir, orig=1): """Convert all .py files to use numpy.oldnumeric (from Numeric) in the directory given For each changed file, a backup of <usesnumeric>.py is made as <usesnumeric>.py.orig. A new file named <usesnumeric>.py is then written with the updated code. """ files = glob.glob(os.path.join(direc,'*.py')) for afile in files: if afile[-8:] == 'setup.py': continue # skip these convertfile(afile, orig) header_re = re.compile(r'(Numeric/arrayobject.h)') def convertsrc(direc=os.path.curdir, ext=None, orig=1): """Replace Numeric/arrayobject.h with numpy/oldnumeric.h in all files in the directory with extension give by list ext (if ext is None, then all files are replaced).""" if ext is None: files = glob.glob(os.path.join(direc,'*')) else: files = [] for aext in ext: files.extend(glob.glob(os.path.join(direc,"*.%s" % aext))) for afile in files: fid = open(afile) fstr = fid.read() fid.close() fstr, n = header_re.subn(r'numpy/oldnumeric.h',fstr) if n > 0: if orig: base, ext = os.path.splitext(afile) os.rename(afile, base+".orig") else: os.remove(afile) makenewfile(afile, fstr) def _func(arg, dirname, fnames): convertall(dirname, orig=0) convertsrc(dirname, ext=['h','c'], orig=0) def converttree(direc=os.path.curdir): """Convert all .py files and source code files in the tree given """ os.path.walk(direc, _func, None) if __name__ == '__main__': fromargs(sys.argv)