EVOLUTION-MANAGER
Edit File: locations.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Genetic locations of traits for the multitrait dataset</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for locations {qtl}"><tr><td>locations {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2> Genetic locations of traits for the multitrait dataset </h2> <h3>Description</h3> <p>A table with genetic locations of the traits in the <code><a href="multitrait.html">multitrait</a></code> dataset </p> <h3>Usage</h3> <pre>data(locations)</pre> <h3>Format</h3> <p>Each row is a trait with the following information: <code>Name</code>, Name of the trait (will be checked against the name in the cross object <code>Chr</code>, Chromosome of the trait <code>cM</code>, Location in cM from the start of the chromosome </p> <h3>Source</h3> <p>Additional information from the Arabidopsis RIL selfing experiment with Landsberg erecta (Ler) and Cape Verde Islands (Cvi) with 162 individuals scored (with errors at) 117 markers. Dataset obtained from GBIC - Groningen BioInformatics Centre </p> <h3>References</h3> <ul> <li><p> Keurentijes JJB, Fu J, de Vos CHR,Lommen A, Jansen RC et al (2006), The genetics of plant metabolism. <em>Nature Genetics</em> <b>38</b>, 842–849. </p> </li> <li><p> Alonso-Blanco C., Peeters, A. J. and Koornneef, M. (2006) Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. <em>Plant J.</em> <b>14</b>(2), 259–271. </p> </li></ul> <h3>See Also</h3> <p><code><a href="multitrait.html">multitrait</a></code> </p> <h3>Examples</h3> <pre> ## Not run: data(multitrait) data(locations) multiloc <- addloctocross(multitrait,locations) results <- scanall(multiloc) mqmplot.cistrans(results,multiloc, 5, FALSE, TRUE) ## End(Not run) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>