EVOLUTION-MANAGER
Edit File: flip.order.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Flip the orders of markers on a set of chromosomes</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for flip.order {qtl}"><tr><td>flip.order {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Flip the orders of markers on a set of chromosomes</h2> <h3>Description</h3> <p>Flip the orders of markers on a specified set of chromosome, so that the markers will be in the reverse order. </p> <h3>Usage</h3> <pre>flip.order(cross, chr)</pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>cross</code></td> <td> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details.</p> </td></tr> <tr valign="top"><td><code>chr</code></td> <td> <p>Vector indicating the chromosomes to flip. This should be a vector of character strings referring to chromosomes by name. A logical (TRUE/FALSE) vector may also be used.</p> </td></tr> </table> <h3>Details</h3> <p>If the cross contains results from <code><a href="calc.genoprob.html">calc.genoprob</a></code>, <code><a href="sim.geno.html">sim.geno</a></code>, <code><a href="argmax.geno.html">argmax.geno</a></code>, or <code><a href="calc.errorlod.html">calc.errorlod</a></code>, those results are also updated. </p> <p>Results of <code><a href="est.rf.html">est.rf</a></code> and <code><a href="markerlrt.html">markerlrt</a></code> are deleted. </p> <h3>Value</h3> <p>The input <code>cross</code> object, but with the marker order on the specified chromosomes flipped. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="switch.order.html">switch.order</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) fake.f2 <- flip.order(fake.f2, c(1, 5, 13)) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>