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Edit File: convert2riself.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Convert a cross to RIL by selfing</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for convert2riself {qtl}"><tr><td>convert2riself {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Convert a cross to RIL by selfing</h2> <h3>Description</h3> <p>Convert a cross to type <code>"riself"</code> (RIL by selfing). </p> <h3>Usage</h3> <pre> convert2riself(cross) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>cross</code></td> <td> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details.</p> </td></tr> </table> <h3>Details</h3> <p>If there are more genotypes with code 3 (BB) than code 2 (AB), we omit the genotypes with code==2 and call those with code==3 the BB genotypes. </p> <p>If, instead, there are more genotypes with code 2 than code 3, we omit the genotypes with code==3 and call those with code==2 the BB genotypes. </p> <p>Any chromosomes with class <code>"X"</code> (X chromosome) are changed to class <code>"A"</code> (autosomal). </p> <h3>Value</h3> <p>The input cross object, with genotype codes possibly changed and cross type changed to <code>"riself"</code>. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="convert2risib.html">convert2risib</a></code> </p> <h3>Examples</h3> <pre> data(hyper) hyper.as.riself <- convert2riself(hyper) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>