EVOLUTION-MANAGER
Edit File: condense.scantwo.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Condense the output from a 2-d genome scan</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for condense.scantwo {qtl}"><tr><td>condense.scantwo {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Condense the output from a 2-d genome scan</h2> <h3>Description</h3> <p>Produces a very condensed version of the output of <code><a href="scantwo.html">scantwo</a></code>. </p> <h3>Usage</h3> <pre> ## S3 method for class 'scantwo' condense(object) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>object</code></td> <td> <p>An object of class <code>scantwo</code>, the output of the function <code><a href="scantwo.html">scantwo</a></code>.</p> </td></tr> </table> <h3>Details</h3> <p>This produces a very reduced version of the output of <code><a href="scantwo.html">scantwo</a></code>, for which a summary may still be created via <code><a href="summary.scantwo.html">summary.scantwo</a></code>, though plots can no longer be made. </p> <h3>Value</h3> <p>An object of class <code>scantwocondensed</code>, containing just the maximum full, additive and interactive LOD scores, and the positions where they occured, on each pair of chromosomes. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a></p> <h3>See Also</h3> <p><code><a href="scantwo.html">scantwo</a></code>, <code><a href="summary.scantwo.html">summary.scantwo</a></code>, <code><a href="max.scantwo.html">max.scantwo</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) fake.f2 <- calc.genoprob(fake.f2) out2 <- scantwo(fake.f2, method="hk") out2c <- condense(out2) summary(out2c, allpairs=FALSE) max(out2c) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>