EVOLUTION-MANAGER
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head><title>R: A General-Purpose Package for Dynamic Report Generation in R</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <h1> A General-Purpose Package for Dynamic Report Generation in R <img class="toplogo" src="../../../doc/html/Rlogo.svg" alt="[R logo]" /> </h1> <hr/> <div style="text-align: center;"> <a href="../../../doc/html/packages.html"><img class="arrow" src="../../../doc/html/left.jpg" alt="[Up]" /></a> <a href="../../../doc/html/index.html"><img class="arrow" src="../../../doc/html/up.jpg" alt="[Top]" /></a> </div><h2>Documentation for package ‘knitr’ version 1.29</h2> <ul><li><a href="../DESCRIPTION">DESCRIPTION file</a>.</li> <li><a href="../doc/index.html">User guides, package vignettes and other documentation.</a></li> <li><a href="../demo">Code demos</a>. Use <a href="../../utils/help/demo">demo()</a> to run them.</li> <li><a href="../NEWS">Package NEWS</a>.</li> </ul> <h2>Help Pages</h2> <p style="text-align: center;"> <a href="# "> </a> <a href="#A">A</a> <a href="#C">C</a> <a href="#D">D</a> <a href="#E">E</a> <a href="#F">F</a> <a href="#H">H</a> <a href="#I">I</a> <a href="#K">K</a> <a href="#L">L</a> <a href="#N">N</a> <a href="#O">O</a> <a href="#P">P</a> <a href="#R">R</a> <a href="#S">S</a> <a href="#V">V</a> <a href="#W">W</a> </p> <table width="100%"> <tr><td style="width: 25%;"><a href="knitr-package.html">knitr-package</a></td> <td>A general-purpose tool for dynamic report generation in R</td></tr> </table> <h2><a name="A">-- A --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="all_labels.html">all_labels</a></td> <td>Get all chunk labels in a document</td></tr> <tr><td style="width: 25%;"><a href="all_patterns.html">all_patterns</a></td> <td>All built-in patterns</td></tr> <tr><td style="width: 25%;"><a href="all_labels.html">all_rcpp_labels</a></td> <td>Get all chunk labels in a document</td></tr> <tr><td style="width: 25%;"><a href="asis_output.html">asis_output</a></td> <td>Mark an R object with a special class</td></tr> </table> <h2><a name="C">-- C --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="cache_engines.html">cache_engines</a></td> <td>Cache engines of other languages</td></tr> <tr><td style="width: 25%;"><a href="clean_cache.html">clean_cache</a></td> <td>Clean cache files that are probably no longer needed</td></tr> <tr><td style="width: 25%;"><a href="combine_words.html">combine_words</a></td> <td>Combine multiple words into a single string</td></tr> <tr><td style="width: 25%;"><a href="current_input.html">current_input</a></td> <td>Query the current input filename</td></tr> </table> <h2><a name="D">-- D --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="dep_auto.html">dep_auto</a></td> <td>Build automatic dependencies among chunks</td></tr> <tr><td style="width: 25%;"><a href="dep_prev.html">dep_prev</a></td> <td>Make later chunks depend on previous chunks</td></tr> </table> <h2><a name="E">-- E --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="engine_output.html">engine_output</a></td> <td>An output wrapper for language engine output</td></tr> <tr><td style="width: 25%;"><a href="raw_output.html">extract_raw_output</a></td> <td>Mark character strings as raw output that should not be converted</td></tr> </table> <h2><a name="F">-- F --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="fig_chunk.html">fig_chunk</a></td> <td>Obtain the figure filenames for a chunk</td></tr> <tr><td style="width: 25%;"><a href="fig_path.html">fig_path</a></td> <td>Path for figure files</td></tr> </table> <h2><a name="H">-- H --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="hook_animation.html">hook_ffmpeg_html</a></td> <td>Hooks to create animations in HTML output</td></tr> <tr><td style="width: 25%;"><a href="hook_animation.html">hook_gifski</a></td> <td>Hooks to create animations in HTML output</td></tr> <tr><td style="width: 25%;"><a href="chunk_hook.html">hook_mogrify</a></td> <td>Built-in chunk hooks to extend knitr</td></tr> <tr><td style="width: 25%;"><a href="hook_document.html">hook_movecode</a></td> <td>Some potentially useful document hooks</td></tr> <tr><td style="width: 25%;"><a href="chunk_hook.html">hook_optipng</a></td> <td>Built-in chunk hooks to extend knitr</td></tr> <tr><td style="width: 25%;"><a href="chunk_hook.html">hook_pdfcrop</a></td> <td>Built-in chunk hooks to extend knitr</td></tr> <tr><td style="width: 25%;"><a href="hook_plot.html">hook_plot_asciidoc</a></td> <td>Default plot hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="chunk_hook.html">hook_plot_custom</a></td> <td>Built-in chunk hooks to extend knitr</td></tr> <tr><td style="width: 25%;"><a href="hook_plot.html">hook_plot_html</a></td> <td>Default plot hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="hook_plot.html">hook_plot_md</a></td> <td>Default plot hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="hook_plot.html">hook_plot_rst</a></td> <td>Default plot hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="hook_plot.html">hook_plot_tex</a></td> <td>Default plot hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="hook_plot.html">hook_plot_textile</a></td> <td>Default plot hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="chunk_hook.html">hook_pngquant</a></td> <td>Built-in chunk hooks to extend knitr</td></tr> <tr><td style="width: 25%;"><a href="chunk_hook.html">hook_purl</a></td> <td>Built-in chunk hooks to extend knitr</td></tr> <tr><td style="width: 25%;"><a href="hook_animation.html">hook_r2swf</a></td> <td>Hooks to create animations in HTML output</td></tr> <tr><td style="width: 25%;"><a href="hook_animation.html">hook_scianimator</a></td> <td>Hooks to create animations in HTML output</td></tr> </table> <h2><a name="I">-- I --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="image_uri.html">image_uri</a></td> <td>Encode an image file to a data URI</td></tr> <tr><td style="width: 25%;"><a href="imgur_upload.html">imgur_upload</a></td> <td>Upload an image to imgur.com</td></tr> <tr><td style="width: 25%;"><a href="include_url.html">include_app</a></td> <td>Embed a URL as an HTML iframe or a screenshot in 'knitr' documents</td></tr> <tr><td style="width: 25%;"><a href="include_graphics.html">include_graphics</a></td> <td>Embed external images in 'knitr' documents</td></tr> <tr><td style="width: 25%;"><a href="include_url.html">include_url</a></td> <td>Embed a URL as an HTML iframe or a screenshot in 'knitr' documents</td></tr> <tr><td style="width: 25%;"><a href="inline_expr.html">inline_expr</a></td> <td>Wrap code using the inline R expression syntax</td></tr> <tr><td style="width: 25%;"><a href="output_type.html">is_html_output</a></td> <td>Check if the current output type is LaTeX or HTML</td></tr> <tr><td style="width: 25%;"><a href="output_type.html">is_latex_output</a></td> <td>Check if the current output type is LaTeX or HTML</td></tr> </table> <h2><a name="K">-- K --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="kable.html">kable</a></td> <td>Create tables in LaTeX, HTML, Markdown and reStructuredText</td></tr> <tr><td style="width: 25%;"><a href="kable.html">kables</a></td> <td>Create tables in LaTeX, HTML, Markdown and reStructuredText</td></tr> <tr><td style="width: 25%;"><a href="knit.html">knit</a></td> <td>Knit a document</td></tr> <tr><td style="width: 25%;"><a href="knit2html.html">knit2html</a></td> <td>Convert markdown to HTML using knit() and markdownToHTML()</td></tr> <tr><td style="width: 25%;"><a href="knit2pandoc.html">knit2pandoc</a></td> <td>Convert various input files to various output files using 'knit()' and Pandoc</td></tr> <tr><td style="width: 25%;"><a href="knit2pdf.html">knit2pdf</a></td> <td>Convert Rnw or Rrst files to PDF</td></tr> <tr><td style="width: 25%;"><a href="knit2wp.html">knit2wp</a></td> <td>Knit an R Markdown document and post it to WordPress</td></tr> <tr><td style="width: 25%;"><a href="knitr-package.html">knitr</a></td> <td>A general-purpose tool for dynamic report generation in R</td></tr> <tr><td style="width: 25%;"><a href="knit_child.html">knit_child</a></td> <td>Knit a child document</td></tr> <tr><td style="width: 25%;"><a href="knit_code.html">knit_code</a></td> <td>The code manager to manage code in all chunks</td></tr> <tr><td style="width: 25%;"><a href="knit_engines.html">knit_engines</a></td> <td>Engines of other languages</td></tr> <tr><td style="width: 25%;"><a href="knit_exit.html">knit_exit</a></td> <td>Exit knitting early</td></tr> <tr><td style="width: 25%;"><a href="knit_expand.html">knit_expand</a></td> <td>A simple macro preprocessor for templating purposes</td></tr> <tr><td style="width: 25%;"><a href="knit_filter.html">knit_filter</a></td> <td>Spell check filter for source documents</td></tr> <tr><td style="width: 25%;"><a href="knit_global.html">knit_global</a></td> <td>The global environment in which code chunks are evaluated</td></tr> <tr><td style="width: 25%;"><a href="knit_hooks.html">knit_hooks</a></td> <td>Hooks for R code chunks, inline R code and output</td></tr> <tr><td style="width: 25%;"><a href="knit_meta.html">knit_meta</a></td> <td>Metadata about objects to be printed</td></tr> <tr><td style="width: 25%;"><a href="knit_meta.html">knit_meta_add</a></td> <td>Metadata about objects to be printed</td></tr> <tr><td style="width: 25%;"><a href="knit_params.html">knit_params</a></td> <td>Extract knit parameters from a document</td></tr> <tr><td style="width: 25%;"><a href="knit_params_yaml.html">knit_params_yaml</a></td> <td>Extract knit parameters from YAML text</td></tr> <tr><td style="width: 25%;"><a href="knit_patterns.html">knit_patterns</a></td> <td>Patterns to match and extract R code in a document</td></tr> <tr><td style="width: 25%;"><a href="knit_print.html">knit_print</a></td> <td>A custom printing function</td></tr> <tr><td style="width: 25%;"><a href="knit_rd.html">knit_rd</a></td> <td>Knit package documentation</td></tr> <tr><td style="width: 25%;"><a href="knit_rd.html">knit_rd_all</a></td> <td>Knit package documentation</td></tr> <tr><td style="width: 25%;"><a href="knit_theme.html">knit_theme</a></td> <td>Syntax highlighting themes</td></tr> <tr><td style="width: 25%;"><a href="knit_watch.html">knit_watch</a></td> <td>Watch an input file continuously and knit it when it is updated</td></tr> </table> <h2><a name="L">-- L --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="load_cache.html">load_cache</a></td> <td>Load the cache database of a code chunk</td></tr> </table> <h2><a name="N">-- N --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="knit_print.html">normal_print</a></td> <td>A custom printing function</td></tr> </table> <h2><a name="O">-- O --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="opts_chunk.html">opts_chunk</a></td> <td>Default and current chunk options</td></tr> <tr><td style="width: 25%;"><a href="opts_chunk.html">opts_current</a></td> <td>Default and current chunk options</td></tr> <tr><td style="width: 25%;"><a href="opts_hooks.html">opts_hooks</a></td> <td>Hooks for code chunk options</td></tr> <tr><td style="width: 25%;"><a href="opts_knit.html">opts_knit</a></td> <td>Options for the knitr package</td></tr> <tr><td style="width: 25%;"><a href="opts_template.html">opts_template</a></td> <td>Template for creating reusable chunk options</td></tr> </table> <h2><a name="P">-- P --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="pandoc.html">pandoc</a></td> <td>A Pandoc wrapper to convert documents to other formats</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_asciidoc</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_brew</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_html</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_md</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_rnw</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_rst</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_tex</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="pat_fun.html">pat_textile</a></td> <td>Set regular expressions to read input documents</td></tr> <tr><td style="width: 25%;"><a href="plot_crop.html">plot_crop</a></td> <td>Crop a plot (remove the edges) using PDFCrop or ImageMagick</td></tr> <tr><td style="width: 25%;"><a href="knit.html">purl</a></td> <td>Knit a document</td></tr> </table> <h2><a name="R">-- R --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="rand_seed.html">rand_seed</a></td> <td>An unevaluated expression to return .Random.seed if exists</td></tr> <tr><td style="width: 25%;"><a href="raw_block.html">raw_block</a></td> <td>Mark character strings as raw blocks in R Markdown</td></tr> <tr><td style="width: 25%;"><a href="raw_block.html">raw_html</a></td> <td>Mark character strings as raw blocks in R Markdown</td></tr> <tr><td style="width: 25%;"><a href="raw_block.html">raw_latex</a></td> <td>Mark character strings as raw blocks in R Markdown</td></tr> <tr><td style="width: 25%;"><a href="raw_output.html">raw_output</a></td> <td>Mark character strings as raw output that should not be converted</td></tr> <tr><td style="width: 25%;"><a href="read_chunk.html">read_chunk</a></td> <td>Read chunks from an external script</td></tr> <tr><td style="width: 25%;"><a href="read_chunk.html">read_demo</a></td> <td>Read chunks from an external script</td></tr> <tr><td style="width: 25%;"><a href="read_rforge.html">read_rforge</a></td> <td>Read source code from R-Forge</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_asciidoc</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_html</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_jekyll</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_latex</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_listings</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_markdown</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_rst</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_sweave</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="output_hooks.html">render_textile</a></td> <td>Set output hooks for different output formats</td></tr> <tr><td style="width: 25%;"><a href="raw_output.html">restore_raw_output</a></td> <td>Mark character strings as raw output that should not be converted</td></tr> <tr><td style="width: 25%;"><a href="rocco.html">rocco</a></td> <td>Knit R Markdown using the classic Docco style</td></tr> <tr><td style="width: 25%;"><a href="rst2pdf.html">rst2pdf</a></td> <td>A wrapper for rst2pdf</td></tr> </table> <h2><a name="S">-- S --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="set_alias.html">set_alias</a></td> <td>Set aliases for chunk options</td></tr> <tr><td style="width: 25%;"><a href="set_header.html">set_header</a></td> <td>Set the header information</td></tr> <tr><td style="width: 25%;"><a href="set_parent.html">set_parent</a></td> <td>Specify the parent document of child documents</td></tr> <tr><td style="width: 25%;"><a href="spin.html">spin</a></td> <td>Spin goat's hair into wool</td></tr> <tr><td style="width: 25%;"><a href="spin_child.html">spin_child</a></td> <td>Spin a child R script</td></tr> <tr><td style="width: 25%;"><a href="stitch.html">stitch</a></td> <td>Automatically create a report based on an R script and a template</td></tr> <tr><td style="width: 25%;"><a href="stitch.html">stitch_rhtml</a></td> <td>Automatically create a report based on an R script and a template</td></tr> <tr><td style="width: 25%;"><a href="stitch.html">stitch_rmd</a></td> <td>Automatically create a report based on an R script and a template</td></tr> <tr><td style="width: 25%;"><a href="Sweave2knitr.html">Sweave2knitr</a></td> <td>Convert Sweave to knitr documents</td></tr> </table> <h2><a name="V">-- V --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="vignette_engines.html">vignette_engines</a></td> <td>Package vignette engines</td></tr> </table> <h2><a name="W">-- W --</a></h2> <table width="100%"> <tr><td style="width: 25%;"><a href="wrap_rmd.html">wrap_rmd</a></td> <td>Wrap long lines in Rmd files</td></tr> <tr><td style="width: 25%;"><a href="write_bib.html">write_bib</a></td> <td>Generate BibTeX bibliography databases for R packages</td></tr> </table> </body></html>