EVOLUTION-MANAGER
Edit File: muscle.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Effect of Calcium Chloride on Muscle Contraction in Rat...</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for muscle {MASS}"><tr><td>muscle {MASS}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2> Effect of Calcium Chloride on Muscle Contraction in Rat Hearts </h2> <h3>Description</h3> <p>The purpose of this experiment was to assess the influence of calcium in solution on the contraction of heart muscle in rats. The left auricle of 21 rat hearts was isolated and on several occasions a constant-length strip of tissue was electrically stimulated and dipped into various concentrations of calcium chloride solution, after which the shortening of the strip was accurately measured as the response. </p> <h3>Usage</h3> <pre> muscle </pre> <h3>Format</h3> <p>This data frame contains the following columns: </p> <dl> <dt><code>Strip</code></dt><dd> <p>which heart muscle strip was used? </p> </dd> <dt><code>Conc</code></dt><dd> <p>concentration of calcium chloride solution, in multiples of 2.2 mM. </p> </dd> <dt><code>Length</code></dt><dd> <p>the change in length (shortening) of the strip, (allegedly) in mm. </p> </dd> </dl> <h3>Source</h3> <p>Linder, A., Chakravarti, I. M. and Vuagnat, P. (1964) Fitting asymptotic regression curves with different asymptotes. In <em>Contributions to Statistics. Presented to Professor P. C. Mahalanobis on the occasion of his 70th birthday</em>, ed. C. R. Rao, pp. 221–228. Oxford: Pergamon Press. </p> <h3>References</h3> <p>Venables, W. N. and Ripley, B. D. (2002) <em>Modern Applied Statistics with S.</em> Fourth Edition. Springer. </p> <h3>Examples</h3> <pre> A <- model.matrix(~ Strip - 1, data=muscle) rats.nls1 <- nls(log(Length) ~ cbind(A, rho^Conc), data = muscle, start = c(rho=0.1), algorithm="plinear") (B <- coef(rats.nls1)) st <- list(alpha = B[2:22], beta = B[23], rho = B[1]) (rats.nls2 <- nls(log(Length) ~ alpha[Strip] + beta*rho^Conc, data = muscle, start = st)) Muscle <- with(muscle, { Muscle <- expand.grid(Conc = sort(unique(Conc)), Strip = levels(Strip)) Muscle$Yhat <- predict(rats.nls2, Muscle) Muscle <- cbind(Muscle, logLength = rep(as.numeric(NA), 126)) ind <- match(paste(Strip, Conc), paste(Muscle$Strip, Muscle$Conc)) Muscle$logLength[ind] <- log(Length) Muscle}) lattice::xyplot(Yhat ~ Conc | Strip, Muscle, as.table = TRUE, ylim = range(c(Muscle$Yhat, Muscle$logLength), na.rm = TRUE), subscripts = TRUE, xlab = "Calcium Chloride concentration (mM)", ylab = "log(Length in mm)", panel = function(x, y, subscripts, ...) { panel.xyplot(x, Muscle$logLength[subscripts], ...) llines(spline(x, y)) }) </pre> <hr /><div style="text-align: center;">[Package <em>MASS</em> version 7.3-51.4 <a href="00Index.html">Index</a>]</div> </body></html>