EVOLUTION-MANAGER

Edit File: MQM-TODO.txt

"To do" list for MQM part of R/qtl ---------------------------------------------------------------------- This file is intended to contain a list of many of the additions and revisions that are planned for the MQM part of the R/qtl package. If you any additions or revisions to suggest, please send an email to the R/qtl mailing list. ---------------------------------------------------------------------- SHORT TERM: o Tutorial and man pages - fix the bibliography (pjotr) ---------------------------------------------------------------------- MEDIUM-SHORT TERM: o MQM paper - Plot Cis/Trans on geneexpression set from Arabidopsis - Circleplot on the same dataset o Augmentation rewrite to use best N augmentations o Placement of cofactors for automatic backward selection (perhaps use windowsize) ---------------------------------------------------------------------- MEDIUM TERM: o 'Environmental' cofactors (Sex,Block,Age, etc) o Generalized Lineair Models - use R version o Handling of the X-chromosome ---------------------------------------------------------------------- LONG TERM: ----------------------------------------------------------------------