EVOLUTION-MANAGER
Edit File: plot.rfmatrix.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Plot recombination fractions or LOD scores for a single...</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for plot.rfmatrix {qtl}"><tr><td>plot.rfmatrix {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Plot recombination fractions or LOD scores for a single marker</h2> <h3>Description</h3> <p>Plot a slice (corresponding to a single marker) through the pairwise recombination fractions or LOD scores calculated by <code><a href="est.rf.html">est.rf</a></code> and extracted with <code><a href="pull.rf.html">pull.rf</a></code>. </p> <h3>Usage</h3> <pre> ## S3 method for class 'rfmatrix' plot(x, marker, ...) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>x</code></td> <td> <p>An object of class <code>rfmatrix</code>, as output by <code><a href="pull.rf.html">pull.rf</a></code>.</p> </td></tr> <tr valign="top"><td><code>marker</code></td> <td> <p>A single marker name, as a character string.</p> </td></tr> <tr valign="top"><td><code>...</code></td> <td> <p>Optional arguments passed to <code><a href="plot.scanone.html">plot.scanone</a></code>.</p> </td></tr> </table> <h3>Value</h3> <p>An object of class <code>"scanone"</code> (as output by <code><a href="scanone.html">scanone</a></code>, and which may be summarized by <code><a href="summary.scanone.html">summary.scanone</a></code> or plotted with <code><a href="plot.scanone.html">plot.scanone</a></code>), containing the estimated recombination fractions or LOD scores for the input marker against all others. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="pull.rf.html">pull.rf</a></code>, <code><a href="est.rf.html">est.rf</a></code>, <code><a href="plot.rf.html">plotRF</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) fake.f2 <- est.rf(fake.f2) marker <- markernames(fake.f2, chr=5)[6] lod <- pull.rf(fake.f2, "lod") plot(lod, marker, bandcol="gray70") </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.46-2 <a href="00Index.html">Index</a>]</div> </body></html>