EVOLUTION-MANAGER
Edit File: fake.f2.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Simulated data for an F2 intercross</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for fake.f2 {qtl}"><tr><td>fake.f2 {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Simulated data for an F2 intercross</h2> <h3>Description</h3> <p>Simulated data for an F2 intercross, obtained using <code><a href="sim.cross.html">sim.cross</a></code>. </p> <h3>Usage</h3> <pre>data(fake.f2)</pre> <h3>Format</h3> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details. </p> <h3>Details</h3> <p>There are 200 F2 individuals typed at 94 markers, including 3 on the X chromosome. There is one quantitative phenotype, along with an indication of sex (0=female, 1=male) and the direction of the cross (pgm = paternal grandmother, 0=A, meaning the cross was (AxB)x(AxB), and 1=B, meaning the cross was (AxB)x(BxA)). </p> <p>Note that the X chromosome genotypes are coded in a special way (see <code><a href="read.cross.html">read.cross</a></code>). For the individuals with pgm=0, sex=0, 1=AA and 2=AB; for individuals with pgm=0, sex=1, 1=A and 2=B (hemizygous); for individuals with pgm=1, sex=0, 1=BB and 2=AB; for individuals with pgm=1, sex=1, 1=A and 2=B. <b>This requires special care!</b> </p> <p>The data were simulated using an additive model with three QTLs on chromosome 1 (at 30, 50 and 70 cM), one QTL on chromosome 13 (at 30 cM), and one QTL on the X chromosome (at 10 cM). </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="sim.cross.html">sim.cross</a></code>, <code><a href="fake.bc.html">fake.bc</a></code>, <code><a href="fake.4way.html">fake.4way</a></code>, <code><a href="listeria.html">listeria</a></code>, <code><a href="hyper.html">hyper</a></code>, <code><a href="bristle3.html">bristle3</a></code>, <code><a href="bristleX.html">bristleX</a></code> </p> <h3>Examples</h3> <pre> data(fake.f2) summary(fake.f2) plot(fake.f2) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.66 <a href="00Index.html">Index</a>]</div> </body></html>