EVOLUTION-MANAGER
Edit File: drop.dupmarkers.html
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml"><head><title>R: Drop duplicate markers</title> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <link rel="stylesheet" type="text/css" href="R.css" /> </head><body> <table width="100%" summary="page for drop.dupmarkers {qtl}"><tr><td>drop.dupmarkers {qtl}</td><td style="text-align: right;">R Documentation</td></tr></table> <h2>Drop duplicate markers</h2> <h3>Description</h3> <p>Drop markers with duplicate names; retaining the first of each set, with consensus genotyps </p> <h3>Usage</h3> <pre> drop.dupmarkers(cross, verbose=TRUE) </pre> <h3>Arguments</h3> <table summary="R argblock"> <tr valign="top"><td><code>cross</code></td> <td> <p>An object of class <code>cross</code>. See <code><a href="read.cross.html">read.cross</a></code> for details.</p> </td></tr> <tr valign="top"><td><code>verbose</code></td> <td> <p>If TRUE, print information on the numbers of genotypes and markers omitted. If > 1, give more detailed information on genotypes omitted.</p> </td></tr> </table> <h3>Value</h3> <p>The input <code>cross</code> object, with any duplicate markers omitted (except for one). The marker retained will have consensus genotypes; if multiple versions of a marker have different genotypes for an individual, they will be replaced by <code>NA</code>. </p> <p>Any derived data (such as produced by <code><a href="calc.genoprob.html">calc.genoprob</a></code>) will be stripped off. </p> <h3>Author(s)</h3> <p>Karl W Broman, <a href="mailto:broman@wisc.edu">broman@wisc.edu</a> </p> <h3>See Also</h3> <p><code><a href="drop.nullmarkers.html">drop.nullmarkers</a></code>, <code><a href="pull.markers.html">pull.markers</a></code>, <code><a href="drop.markers.html">drop.markers</a></code>, <code><a href="summary.cross.html">summary.cross</a></code>, <code><a href="clean.cross.html">clean.cross</a></code> </p> <h3>Examples</h3> <pre> data(listeria) listeria <- drop.dupmarkers(listeria) </pre> <hr /><div style="text-align: center;">[Package <em>qtl</em> version 1.46-2 <a href="00Index.html">Index</a>]</div> </body></html>